Author: pwang
Date: 2008-09-09 11:33:18 -0700 (Tue, 09 Sep 2008)
New Revision: 14863
Modified:
csplugins/trunk/ucsd/pwang/SessionForWebPlugin/src/SessionForWebPlugin/HTMLSessionExporter.java
Log:
Add support for Export_for_cellcircuits_website
Modified:
csplugins/trunk/ucsd/pwang/SessionForWebPlugin/src/SessionForWebPlugin/HTMLSessionExporter.java
===================================================================
---
csplugins/trunk/ucsd/pwang/SessionForWebPlugin/src/SessionForWebPlugin/HTMLSessionExporter.java
2008-09-09 18:31:12 UTC (rev 14862)
+++
csplugins/trunk/ucsd/pwang/SessionForWebPlugin/src/SessionForWebPlugin/HTMLSessionExporter.java
2008-09-09 18:33:18 UTC (rev 14863)
@@ -69,9 +69,14 @@
{
List<String> networkIDs = networkIDs();
//crap(networkIDs);
- writeSession();
- generateNetworkFiles(networkIDs);
- generateIndexHTML(networkIDs);
+ if (settings.destination ==
settings.DESTINATION_ZIP_ARCHIVE_4CELLCIRCUITS) {
+
generateNetworkFiles(networkIDs);
+ }
+ else {
+ writeSession();
+
generateNetworkFiles(networkIDs);
+ generateIndexHTML(networkIDs);
+ }
bundle.close();
}
catch (Exception e)
@@ -316,9 +321,17 @@
// export the sif file
setStatus("Exporting SIF for: " +
networkTitle);
setPercentCompleted(10 + 80 *
currentNetwork / networkCount);
-
bundle.openEntry(Bundle.sifFile(networkTitle));
- CyNetwork network =
Cytoscape.getNetwork(networkID);
-
InteractionWriter.writeInteractions(network, bundle.entryWriter(), null);
+ if (settings.destination ==
settings.DESTINATION_ZIP_ARCHIVE_4CELLCIRCUITS) {
+ ZipBundle2 zipBundle2 =
(ZipBundle2) bundle;
+ zipBundle2.openEntry("sif",
Bundle.sifFile(networkTitle));
+ CyNetwork network =
Cytoscape.getNetwork(networkID);
+
InteractionWriter.writeInteractions(network, zipBundle2.entryWriter(), null);
+ }
+ else {
+
bundle.openEntry(Bundle.sifFile(networkTitle));
+ CyNetwork network =
Cytoscape.getNetwork(networkID);
+
InteractionWriter.writeInteractions(network, bundle.entryWriter(), null);
+ }
bundle.closeEntry();
if (needToHalt)
@@ -331,10 +344,16 @@
BufferedImage image =
GraphViewToImage.convert(view, settings);
if (image != null)
{
-
bundle.openEntry(Bundle.imageFile(networkTitle, settings.imageFormat));
- ImageIO.write(image,
settings.imageFormat, bundle.entryOutputStream());
+ if (settings.destination ==
settings.DESTINATION_ZIP_ARCHIVE_4CELLCIRCUITS) {
+ ZipBundle2 zipBundle2 =
(ZipBundle2) bundle;
+
zipBundle2.openEntry("img", Bundle.imageFile(networkTitle,
settings.imageFormat));
+ ImageIO.write(image,
settings.imageFormat, bundle.entryOutputStream());
+ }
+ else {
+
bundle.openEntry(Bundle.imageFile(networkTitle, settings.imageFormat));
+ ImageIO.write(image,
settings.imageFormat, bundle.entryOutputStream());
+ }
bundle.closeEntry();
-
}
if (needToHalt)
@@ -343,14 +362,26 @@
// generate thumbnail
setStatus("Generating thumbnail for: "
+ networkTitle);
setPercentCompleted(10 + 80 *
currentNetwork / networkCount + 40 / networkCount);
-
bundle.openEntry(Bundle.thumbnailFile(networkTitle, settings.imageFormat));
- BufferedImage thumbnail =
Thumbnails.createThumbnail(image, settings);
- ImageIO.write(thumbnail,
settings.imageFormat, bundle.entryOutputStream());
+ if (settings.destination ==
settings.DESTINATION_ZIP_ARCHIVE_4CELLCIRCUITS) {
+ ZipBundle2 zipBundle2 =
(ZipBundle2) bundle;
+ zipBundle2.openEntry("thm_img",
ZipBundle2.thumbnailFile(networkTitle, settings.imageFormat));
+ BufferedImage thumbnail =
Thumbnails.createThumbnail(image, settings);
+ ImageIO.write(thumbnail,
settings.imageFormat, zipBundle2.entryOutputStream());
+ }
+ else {
+
bundle.openEntry(Bundle.thumbnailFile(networkTitle, settings.imageFormat));
+ BufferedImage thumbnail =
Thumbnails.createThumbnail(image, settings);
+ ImageIO.write(thumbnail,
settings.imageFormat, bundle.entryOutputStream());
+ }
bundle.closeEntry();
if (needToHalt)
return;
+ if (settings.destination ==
settings.DESTINATION_ZIP_ARCHIVE_4CELLCIRCUITS) {
+ continue;
+ }
+
// render legend
setPercentCompleted(10 + 80 *
currentNetwork / networkCount + 60 / networkCount);
VisualStyle visualStyle =
Cytoscape.getNetworkView(networkID).getVisualStyle();
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