Author: kono
Date: 2008-09-24 16:10:27 -0700 (Wed, 24 Sep 2008)
New Revision: 14955
Added:
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/PythonEnginePlugin.java
Log:
Initial checkin for Python plugin code.
Added:
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/PythonEnginePlugin.java
===================================================================
---
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/PythonEnginePlugin.java
2008-09-24 23:09:15 UTC (rev 14954)
+++
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/PythonEnginePlugin.java
2008-09-24 23:10:27 UTC (rev 14955)
@@ -0,0 +1,173 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package edu.ucsd.bioeng.idekerlab.pythonengine;
+
+import cytoscape.Cytoscape;
+
+import cytoscape.logger.CyLogger;
+
+import cytoscape.plugin.CytoscapePlugin;
+
+import edu.ucsd.bioeng.idekerlab.pythonengine.ui.PythonConsole;
+import edu.ucsd.bioeng.idekerlab.scriptenginemanager.ScriptEngineManagerPlugin;
+import edu.ucsd.bioeng.idekerlab.scriptenginemanager.engine.ScriptingEngine;
+
+import org.apache.bsf.BSFManager;
+
+import java.awt.event.ActionEvent;
+
+import java.beans.PropertyChangeEvent;
+
+import java.io.File;
+
+import java.lang.reflect.Method;
+
+import javax.swing.AbstractAction;
+import javax.swing.Icon;
+import javax.swing.ImageIcon;
+import javax.swing.JMenuItem;
+
+
+/**
+ *
+ */
+public class PythonEnginePlugin extends CytoscapePlugin implements
ScriptingEngine {
+ private static final String ENGINE_NAME = "jython";
+ private static final String ENGINE_DISPLAY_NAME = "Python Scripting
Engine (based on Jython v2.2.1)";
+
+ // BSF engine name
+ private static final String ENGINE_CLASS_NAME =
"org.apache.bsf.engines.jython.JythonEngine";
+
+ // Icon of for script runner dialog
+ private static final Icon ICON = new
ImageIcon(PythonEnginePlugin.class.getResource("/images/python.png"));
+
+ // Static instance of this plugin
+ private static final PythonEnginePlugin engine = new
PythonEnginePlugin();
+
+ // private static final JyConsole console = new JyConsole();
+
+ /**
+ * Creates a new RubyEnginePlugin object.
+ */
+ public PythonEnginePlugin() {
+
Cytoscape.getPropertyChangeSupport().addPropertyChangeListener(this);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public String getDisplayName() {
+ // TODO Auto-generated method stub
+ return ENGINE_DISPLAY_NAME;
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public Icon getIcon() {
+ // TODO Auto-generated method stub
+ return ICON;
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public String getIdentifier() {
+ // TODO Auto-generated method stub
+ return ENGINE_NAME;
+ }
+
+ /**
+ * DOCUMENT ME!
+ */
+ public static void register() {
+ BSFManager.registerScriptingEngine(ENGINE_NAME,
ENGINE_CLASS_NAME,
+ new String[] { ENGINE_NAME
});
+
+ try {
+ final Class engineClass =
Class.forName("edu.ucsd.bioeng.idekerlab.scriptenginemanager.ScriptEngineManager");
+ Method method = engineClass.getMethod("registerEngine",
+ new Class[] {
String.class, ScriptingEngine.class });
+ Object ret = method.invoke(null, new Object[] {
ENGINE_NAME, engine });
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ final JMenuItem consoleMenuItem = new JMenuItem(new
AbstractAction("Open Python Console...") {
+ public void actionPerformed(ActionEvent e) {
+
PythonConsole.getConsoleFrame().setVisible(true);
+ }
+ });
+
+ consoleMenuItem.setIcon(new
ImageIcon(PythonEnginePlugin.class.getResource("/images/python22x22.png")));
+
+
ScriptEngineManagerPlugin.getManager().addConsoleMenu(consoleMenuItem);
+
+ CyLogger.getLogger().info("Python scripting engine registered
successfully.");
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param fileName DOCUMENT ME!
+ */
+ public static void executePythonScript(String fileName) {
+ PythonConsole.getConsoleFrame().setVisible(true);
+ PythonConsole.getConsole().clear();
+ PythonConsole.getConsole().executePythonFile(new
File(fileName));
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void propertyChange(PropertyChangeEvent e) {
+ if
(ScriptEngineManagerPlugin.getManager().getEngine(ENGINE_NAME) != null)
+ return;
+
+ if
(e.getPropertyName().equals(Cytoscape.CYTOSCAPE_INITIALIZED)) {
+ // Register this to ScriptEngineManager.
+ register();
+ }
+ }
+}
Property changes on:
csplugins/trunk/ucsd/kono/PythonEnginePlugin/src/edu/ucsd/bioeng/idekerlab/pythonengine/PythonEnginePlugin.java
___________________________________________________________________
Name: svn:mergeinfo
+
--~--~---------~--~----~------------~-------~--~----~
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected]
To unsubscribe from this group, send email to [EMAIL PROTECTED]
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en
-~----------~----~----~----~------~----~------~--~---
