Author: kono Date: 2009-03-09 13:36:09 -0700 (Mon, 09 Mar 2009) New Revision: 16185
Modified: cytoscape3/trunk/pom.xml Log: Mac runtime properties added. These will be ignored in Windows and Linux. Modified: cytoscape3/trunk/pom.xml =================================================================== --- cytoscape3/trunk/pom.xml 2009-03-09 17:04:47 UTC (rev 16184) +++ cytoscape3/trunk/pom.xml 2009-03-09 20:36:09 UTC (rev 16185) @@ -1,323 +1,325 @@ <?xml version="1.0" encoding="UTF-8"?> -<project xmlns="http://maven.apache.org/POM/4.0.0"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";> +<project xmlns="http://maven.apache.org/POM/4.0.0"; + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"; + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";> - <name>Cytoscape Core</name> + <name>Cytoscape Core</name> - <url>http://cytoscape.org</url> + <url>http://cytoscape.org</url> - <description>A network visualization and analysis application.</description> + <description>A network visualization and analysis application.</description> - <organization> - <name>Cytoscape</name> - <url>http://cytoscape.org</url> - </organization> + <organization> + <name>Cytoscape</name> + <url>http://cytoscape.org</url> + </organization> - <licenses> - <license> - <name>GNU Lesser General Public License</name> - <url>http://www.gnu.org/licenses/lgpl-3.0.txt</url> - </license> - </licenses> + <licenses> + <license> + <name>GNU Lesser General Public License</name> + <url>http://www.gnu.org/licenses/lgpl-3.0.txt</url> + </license> + </licenses> - <issueManagement> - <system>Mantis</system> - <url>http://cbio.mskcc.org/cytoscape/bugs/main_page.php</url> - </issueManagement> + <issueManagement> + <system>Mantis</system> + <url>http://cbio.mskcc.org/cytoscape/bugs/main_page.php</url> + </issueManagement> - <ciManagement> - <system>cruisecontrol</system> - <url>http://chianti.ucsd.edu/cruisecontrol</url> - </ciManagement> + <ciManagement> + <system>cruisecontrol</system> + <url>http://chianti.ucsd.edu/cruisecontrol</url> + </ciManagement> - <mailingLists> - <mailingList> - <name>Cytoscape Discuss: A list for users to ask and discuss + <mailingLists> + <mailingList> + <name>Cytoscape Discuss: A list for users to ask and discuss questions about Cytoscape.</name> - <subscribe>http://groups.google.com/group/cytoscape-discuss</subscribe> - <unsubscribe>http://groups.google.com/group/cytoscape-discuss</unsubscribe> - <post>[email protected]</post> - <archive>http://groups.google.com/group/cytoscape-discuss</archive> - </mailingList> - <mailingList> - <name>Cytoscape Helpdesk: A list for users to request help + <subscribe>http://groups.google.com/group/cytoscape-discuss</subscribe> + <unsubscribe>http://groups.google.com/group/cytoscape-discuss</unsubscribe> + <post>[email protected]</post> + <archive>http://groups.google.com/group/cytoscape-discuss</archive> + </mailingList> + <mailingList> + <name>Cytoscape Helpdesk: A list for users to request help about Cytoscape.</name> - <subscribe>http://groups.google.com/group/cytoscape-helpdesk</subscribe> - <unsubscribe>http://groups.google.com/group/cytoscape-helpdesk</unsubscribe> - <post>[email protected]</post> - <archive>http://groups.google.com/group/cytoscape-helpdesk</archive> - </mailingList> - <mailingList> - <name>Cytoscape Announce: A low volume list for + <subscribe>http://groups.google.com/group/cytoscape-helpdesk</subscribe> + <unsubscribe>http://groups.google.com/group/cytoscape-helpdesk</unsubscribe> + <post>[email protected]</post> + <archive>http://groups.google.com/group/cytoscape-helpdesk</archive> + </mailingList> + <mailingList> + <name>Cytoscape Announce: A low volume list for announcements relevant to Cytoscape users and developers.</name> - <subscribe>http://groups.google.com/group/cytoscape-announce</subscribe> - <unsubscribe>http://groups.google.com/group/cytoscape-announce</unsubscribe> - <post>[email protected]</post> - <archive>http://groups.google.com/group/cytoscape-announce</archive> - </mailingList> - </mailingLists> + <subscribe>http://groups.google.com/group/cytoscape-announce</subscribe> + <unsubscribe>http://groups.google.com/group/cytoscape-announce</unsubscribe> + <post>[email protected]</post> + <archive>http://groups.google.com/group/cytoscape-announce</archive> + </mailingList> + </mailingLists> - <scm> - <connection>scm:svn:http://chianti.ucsd.edu/svn/cytoscape3/trunk</connection> - <developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/trunki</developerConnection> - <url>http://chianti.ucsd.edu/svn/cytoscape3/trunk</url> - </scm> + <scm> + <connection>scm:svn:http://chianti.ucsd.edu/svn/cytoscape3/trunk</connection> + <developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/trunki</developerConnection> + <url>http://chianti.ucsd.edu/svn/cytoscape3/trunk</url> + </scm> - <developers> - <developer> - <id>mes</id> - <name>Mike Smoot</name> - <email>msmoot ~ ucsd / edu</email> - <url>http://chianti.ucsd.edu/~mes</url> - <organization>U.C. San Diego</organization> - <organizationUrl>http://ucsd.edu</organizationUrl> - <roles> - <role>Architect</role> - <role>Core Developer</role> - </roles> - <timezone>-8</timezone> - </developer> - <developer> - <id>kono</id> - <name>Keiichiro Ono</name> - <email>kono at ucsd dot edu</email> - <url>http://chianti.ucsd.edu/kono</url> - <organization>U.C. San Diego</organization> - <timezone>-8</timezone> - <roles> - <role>Core Developer</role> - </roles> - </developer> - </developers> + <developers> + <developer> + <id>mes</id> + <name>Mike Smoot</name> + <email>msmoot ~ ucsd / edu</email> + <url>http://chianti.ucsd.edu/~mes</url> + <organization>U.C. San Diego</organization> + <organizationUrl>http://ucsd.edu</organizationUrl> + <roles> + <role>Architect</role> + <role>Core Developer</role> + </roles> + <timezone>-8</timezone> + </developer> + <developer> + <id>kono</id> + <name>Keiichiro Ono</name> + <email>kono at ucsd dot edu</email> + <url>http://chianti.ucsd.edu/kono</url> + <organization>U.C. San Diego</organization> + <timezone>-8</timezone> + <roles> + <role>Core Developer</role> + </roles> + </developer> + </developers> - <modelVersion>4.0.0</modelVersion> - <groupId>cytoscape</groupId> - <artifactId>core</artifactId> - <version>1.0-SNAPSHOT</version> + <modelVersion>4.0.0</modelVersion> + <groupId>cytoscape</groupId> + <artifactId>core</artifactId> + <version>1.0-SNAPSHOT</version> - <properties> - <!-- System Bundle Versions --> - <spring.version>2.5.5</spring.version> - <spring.osgi.version>1.1.2</spring.osgi.version> - <slf4j.version>1.5.0</slf4j.version> - <!-- some example OSGi runtime properties --> - <org.osgi.service.http.port>8080</org.osgi.service.http.port> - <org.osgi.service.http.port.secure>8443</org.osgi.service.http.port.secure> - <felix.fragment.validation>warning</felix.fragment.validation> - </properties> + <properties> + <!-- System Bundle Versions --> + <spring.version>2.5.5</spring.version> + <spring.osgi.version>1.1.2</spring.osgi.version> + <slf4j.version>1.5.0</slf4j.version> + <!-- some example OSGi runtime properties --> + <org.osgi.service.http.port>8080</org.osgi.service.http.port> + <org.osgi.service.http.port.secure>8443</org.osgi.service.http.port.secure> + <felix.fragment.validation>warning</felix.fragment.validation> + </properties> - <packaging>pom</packaging> + <packaging>pom</packaging> - <repositories> - <repository> - <id>cytoscape_snapshots</id> - <snapshots> - <enabled>true</enabled> - </snapshots> - <releases> - <enabled>false</enabled> - </releases> - <name>Cytoscape Snapshots</name> - <url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url> - </repository> - <!-- + <repositories> + <repository> + <id>cytoscape_snapshots</id> + <snapshots> + <enabled>true</enabled> + </snapshots> + <releases> + <enabled>false</enabled> + </releases> + <name>Cytoscape Snapshots</name> + <url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url> + </repository> + <!-- bootstrap for cytoscape dependencies, namely the parent POM releases --> - <repository> - <id>cytoscape_releases</id> - <snapshots> - <enabled>false</enabled> - </snapshots> - <releases> - <enabled>true</enabled> - </releases> - <name>Cytoscape Releases</name> - <url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url> - </repository> - <!-- for biojava --> - <repository> - <id>wwmm</id> - <snapshots> - <enabled>false</enabled> - </snapshots> - <name>Murray-Rust Research Group</name> - <url>http://wwmm.ch.cam.ac.uk/maven2</url> - </repository> - <!-- for jars I can't find anywhere else --> - <repository> - <id>chianti</id> - <snapshots> - <enabled>false</enabled> - </snapshots> - <name>Cytoscape Internal Repository</name> - <url>http://chianti.ucsd.edu/maven2</url> - </repository> - <!-- for freehep jars --> - <repository> - <id>freehep-maven</id> - <name>Maven FreeHEP</name> - <url>http://java.freehep.org/maven2</url> - </repository> - <!-- SpringSource OSGi Bundle Repository --> - <repository> - <id>com.springsource.repository.bundles.release</id> - <name>SpringSource OSGi Bundle Repository</name> - <url>http://repository.springsource.com/maven/bundles/release</url> - <snapshots> - <enabled>false</enabled> - </snapshots> - </repository> - <repository> - <id>com.springsource.repository.bundles.external</id> - <name>SpringSource OSGi Bundle Repository</name> - <url>http://repository.springsource.com/maven/bundles/external</url> - <snapshots> - <enabled>false</enabled> - </snapshots> - </repository> - </repositories> + <repository> + <id>cytoscape_releases</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <releases> + <enabled>true</enabled> + </releases> + <name>Cytoscape Releases</name> + <url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url> + </repository> + <!-- for biojava --> + <repository> + <id>wwmm</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <name>Murray-Rust Research Group</name> + <url>http://wwmm.ch.cam.ac.uk/maven2</url> + </repository> + <!-- for jars I can't find anywhere else --> + <repository> + <id>chianti</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <name>Cytoscape Internal Repository</name> + <url>http://chianti.ucsd.edu/maven2</url> + </repository> + <!-- for freehep jars --> + <repository> + <id>freehep-maven</id> + <name>Maven FreeHEP</name> + <url>http://java.freehep.org/maven2</url> + </repository> + <!-- SpringSource OSGi Bundle Repository --> + <repository> + <id>com.springsource.repository.bundles.release</id> + <name>SpringSource OSGi Bundle Repository</name> + <url>http://repository.springsource.com/maven/bundles/release</url> + <snapshots> + <enabled>false</enabled> + </snapshots> + </repository> + <repository> + <id>com.springsource.repository.bundles.external</id> + <name>SpringSource OSGi Bundle Repository</name> + <url>http://repository.springsource.com/maven/bundles/external</url> + <snapshots> + <enabled>false</enabled> + </snapshots> + </repository> + </repositories> - <build> - <plugins> - <plugin> - <groupId>org.apache.maven.plugins</groupId> - <artifactId>maven-surefire-plugin</artifactId> - <configuration> - <redirectTestOutputToFile>true</redirectTestOutputToFile> - </configuration> - </plugin> - <plugin> - <groupId>org.ops4j</groupId> - <artifactId>maven-pax-plugin</artifactId> - <configuration> - <!-- some example Pax-Runner settings --> - <provision> - <param>--log=DEBUG</param> - <param>--platform=felix</param> - <param>--profiles=minimal</param> - <param>--vmOptions=-Xbootclasspath/a:bundles/cytoscape-sun.jhall_1.0.0.jar</param> - </provision> - </configuration> - <!-- + <build> + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-plugin</artifactId> + <configuration> + <redirectTestOutputToFile>true</redirectTestOutputToFile> + </configuration> + </plugin> + <plugin> + <groupId>org.ops4j</groupId> + <artifactId>maven-pax-plugin</artifactId> + <configuration> + <!-- some example Pax-Runner settings --> + <provision> + <param>--log=DEBUG</param> + <param>--platform=felix</param> + <param>--profiles=minimal</param> + <param>--vmOptions=-Xbootclasspath/a:bundles/cytoscape-sun.jhall_1.0.0.jar -Dapple.laf.useScreenMenuBar=true -Dapple.awt.fileDialogForDirectories=true -Dapple.awt.graphics.UseQuartz=true -Dcom.apple.mrj.application.apple.menu.about.name=Cytoscape3</param> + </provision> + </configuration> + <!-- executions> <execution> <id>ide-support</id> <phase>package</phase> <goals> <goal>eclipse</goal> </goals> </execution> </executions --> - </plugin> - <!-- + </plugin> + <!-- <plugin> <artifactId>maven-assembly-plugin</artifactId> <configuration> <descriptors> <descriptor>assembly.xml</descriptor> </descriptors> </configuration> </plugin> --> - <plugin> - <groupId>org.apache.maven.plugins</groupId> - <artifactId>maven-compiler-plugin</artifactId> - <configuration> - <source>1.5</source> - <target>1.5</target> - <showWarnings>true</showWarnings> - <showDeprecation>true</showDeprecation> - <compilerArguments> - <!-- <Xlint:all></Xlint:all> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-compiler-plugin</artifactId> + <configuration> + <source>1.5</source> + <target>1.5</target> + <showWarnings>true</showWarnings> + <showDeprecation>true</showDeprecation> + <compilerArguments> + <!-- <Xlint:all></Xlint:all> <Xlint:-path></Xlint:-path> --> - <Xmaxwarns>10000</Xmaxwarns> - <Xmaxerrs>10000</Xmaxerrs> - </compilerArguments> - </configuration> - </plugin> - </plugins> - </build> + <Xmaxwarns>10000</Xmaxwarns> + <Xmaxerrs>10000</Xmaxerrs> + </compilerArguments> + </configuration> + </plugin> + </plugins> + </build> - <reporting> - <plugins> - <plugin> - <groupId>org.codehaus.mojo</groupId> - <artifactId>taglist-maven-plugin</artifactId> - <version>2.2</version> - <configuration> - <tags> - <tag>TODO</tag> - <tag>FIXME</tag> - <tag>@todo</tag> - <tag>@deprecated</tag> - <tag>DOCUMENT ME</tag> - </tags> - </configuration> - </plugin> - <plugin> - <groupId>org.apache.maven.plugins</groupId> - <artifactId>maven-pmd-plugin</artifactId> - <configuration> - <linkXref>true</linkXref> - <sourceEncoding>utf-8</sourceEncoding> - <minimumTokens>100</minimumTokens> - <targetJdk>1.5</targetJdk> - <excludes> - <exclude>**/*Bean.java</exclude> - <exclude>**/generated/*.java</exclude> - </excludes> - </configuration> - </plugin> - <plugin> - <groupId>org.codehaus.mojo</groupId> - <artifactId>cobertura-maven-plugin</artifactId> - </plugin> - <plugin> - <groupId>org.codehaus.mojo</groupId> - <artifactId>findbugs-maven-plugin</artifactId> - <configuration> - <threshold>Normal</threshold> - </configuration> - </plugin> - <plugin> - <groupId>org.codehaus.mojo</groupId> - <artifactId>jdepend-maven-plugin</artifactId> - </plugin> - <plugin> - <artifactId>maven-javadoc-plugin</artifactId> - <configuration> - <excludePackageNames>*.impl</excludePackageNames> - </configuration> - <reportSets> - <reportSet> - <reports> - <report>javadoc</report> - <!-- <report>test-javadoc</report> --> - </reports> - </reportSet> - </reportSets> - </plugin> - <plugin> - <groupId>org.codehaus.mojo</groupId> - <artifactId>jxr-maven-plugin</artifactId> - </plugin> - <plugin> - <groupId>org.apache.maven.plugins</groupId> - <artifactId>maven-surefire-report-plugin</artifactId> - </plugin> - </plugins> - </reporting> + <reporting> + <plugins> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>taglist-maven-plugin</artifactId> + <version>2.2</version> + <configuration> + <tags> + <tag>TODO</tag> + <tag>FIXME</tag> + <tag>@todo</tag> + <tag>@deprecated</tag> + <tag>DOCUMENT ME</tag> + </tags> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-pmd-plugin</artifactId> + <configuration> + <linkXref>true</linkXref> + <sourceEncoding>utf-8</sourceEncoding> + <minimumTokens>100</minimumTokens> + <targetJdk>1.5</targetJdk> + <excludes> + <exclude>**/*Bean.java</exclude> + <exclude>**/generated/*.java</exclude> + </excludes> + </configuration> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>cobertura-maven-plugin</artifactId> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>findbugs-maven-plugin</artifactId> + <configuration> + <threshold>Normal</threshold> + </configuration> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>jdepend-maven-plugin</artifactId> + </plugin> + <plugin> + <artifactId>maven-javadoc-plugin</artifactId> + <configuration> + <excludePackageNames>*.impl</excludePackageNames> + </configuration> + <reportSets> + <reportSet> + <reports> + <report>javadoc</report> + <!-- <report>test-javadoc</report> --> + </reports> + </reportSet> + </reportSets> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>jxr-maven-plugin</artifactId> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-report-plugin</artifactId> + </plugin> + </plugins> + </reporting> - <modules> - <module>poms</module> - <module>provision</module> - <module>splash</module> - <module>util.intr</module> - <module>render.immed</module> - <module>geom.spacial</module> - <module>render.stateful</module> - <module>geom.rtree</module> - <module>render.export</module> - <module>tunable</module> - <module>task</module> - <module>view</module> - <module>phoebe.dnd</module> - <module>layout</module> - <module>wrappers</module> - <module>vizmap</module> - <module>commons.cli</module> - <module>application</module> - <module>webservice</module> - <module>vizmap-gui</module> - <!-- + <modules> + <module>poms</module> + <module>provision</module> + <module>splash</module> + <module>util.intr</module> + <module>render.immed</module> + <module>geom.spacial</module> + <module>render.stateful</module> + <module>geom.rtree</module> + <module>render.export</module> + <module>tunable</module> + <module>task</module> + <module>view</module> + <module>phoebe.dnd</module> + <module>layout</module> + <module>wrappers</module> + <module>vizmap</module> + <module>commons.cli</module> + <module>application</module> + <module>webservice</module> + <module>vizmap-gui</module> + <!-- <module>automatic.layout</module> <module>cpath</module> <module>merge</module> <module>math.xform</module> <module>psi.mi</module> <module>biopax</module> @@ -328,7 +330,7 @@ <module>quickfind</module> <module>table.import</module> <module>ontology</module> --> - <module>property</module> - </modules> + <module>property</module> + </modules> </project> --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en -~----------~----~----~----~------~----~------~--~---
