Author: scooter
Date: 2009-03-16 11:00:48 -0700 (Mon, 16 Mar 2009)
New Revision: 16285
Added:
csplugins/trunk/ucsf/scooter/batchTool/src/batchTool/commands/SetCommand.java
Log:
Added Set command
Added:
csplugins/trunk/ucsf/scooter/batchTool/src/batchTool/commands/SetCommand.java
===================================================================
---
csplugins/trunk/ucsf/scooter/batchTool/src/batchTool/commands/SetCommand.java
2009-03-16 15:02:07 UTC (rev 16284)
+++
csplugins/trunk/ucsf/scooter/batchTool/src/batchTool/commands/SetCommand.java
2009-03-16 18:00:48 UTC (rev 16285)
@@ -0,0 +1,97 @@
+/* vim: set ts=2: */
+/**
+ * Copyright (c) 2007 The Regents of the University of California.
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ * notice, this list of conditions, and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above
+ * copyright notice, this list of conditions, and the following
+ * disclaimer in the documentation and/or other materials provided
+ * with the distribution.
+ * 3. Redistributions must acknowledge that this software was
+ * originally developed by the UCSF Computer Graphics Laboratory
+ * under support by the NIH National Center for Research Resources,
+ * grant P41-RR01081.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY
+ * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ * PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS BE LIABLE
+ * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
+ * OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
+ * BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+ * OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+ * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *
+ */
+package batchTool.commands;
+
+import cytoscape.Cytoscape;
+import cytoscape.CytoscapeInit;
+import cytoscape.logger.CyLogger;
+import cytoscape.view.CyNetworkView;
+import cytoscape.visual.VisualMappingManager;
+import cytoscape.visual.VisualStyle;
+
+import java.util.List;
+import java.util.HashMap;
+import java.util.Properties;
+import java.util.Set;
+import batchTool.commands.ParseException;
+
+/**
+ * The set command sets Cytoscape properties
+ */
+public class SetCommand extends AbstractCommand {
+ String propertyName = null;
+ /**
+ * commandName returns the command name. This is used to build the
+ * hash table of commands to hand to the command parser
+ *
+ * @return name of the command
+ */
+ public String commandName() { return "set"; }
+
+ /**
+ * parse is the main parse routine. It is handed the entire command
+ * along with all of its arguments. If the command is successfully
+ * parsed, the number of arguments actually read is returned.
+ *
+ * @param args the arguments to the command. The "set" command
+ * takes a series of name=value pairs where the name is the
+ * name of a property and the value is the value to set that
+ * property to.
+ *
+ * set exportTextAsShape=true
+ */
+ public int parse(List<String> args, HashMap<String,String>optMap)
throws ParseException {
+ if (args.size() < 2)
+ throw new ParseException("Nothing to set");
+ // Get the properties
+ Properties props = CytoscapeInit.getProperties();
+
+ Set<String>keys = optMap.keySet();
+ for (String key: keys) {
+ String value = optMap.get(key);
+ props.setProperty(key, value);
+ CyLogger.getLogger(SetCommand.class).debug("SetCommand:
setting property "+key+" to "+value);
+ }
+ return args.size();
+ }
+
+ /**
+ * execute
+ *
+ * @param substitutions reserved for future use
+ */
+ public int execute(String[] substitutions) throws Exception {
+ return 0;
+ }
+
+}
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