Author: mmichaud
Date: 2009-04-02 07:55:52 -0700 (Thu, 02 Apr 2009)
New Revision: 16418
Added:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/InputStreamChoose.java
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/proxy.java
Modified:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/PrintSomething.java
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/fileChoose.java
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/input.java
Log:
Added:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/InputStreamChoose.java
===================================================================
---
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/InputStreamChoose.java
2009-04-02 14:55:36 UTC (rev 16417)
+++
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/InputStreamChoose.java
2009-04-02 14:55:52 UTC (rev 16418)
@@ -0,0 +1,21 @@
+package org.cytoscape.command;
+
+import java.io.InputStream;
+import java.net.MalformedURLException;
+import java.net.URL;
+import org.cytoscape.work.*;
+
+public class InputStreamChoose implements Command{
+
+ @Tunable(description = "URL choose",group = {"Import Network File"})
+ public InputStream is;
+
+ public InputStreamChoose(){
+// try{
+// url = new URL("");
+// }catch(MalformedURLException e){e.printStackTrace();}
+ }
+
+ public void execute(){}
+
+}
\ No newline at end of file
Modified:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/PrintSomething.java
===================================================================
---
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/PrintSomething.java
2009-04-02 14:55:36 UTC (rev 16417)
+++
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/PrintSomething.java
2009-04-02 14:55:52 UTC (rev 16418)
@@ -12,15 +12,15 @@
@Tunable(description="your last name", group={"stuff","advanced"},
flag={Param.collapsed})
public String lastName = "simpson";
- @Tunable(description="Test",dependsOn="monthNames=[April]")
+ @Tunable(description="Test",dependsOn="dayNames=[Wednesday]")
public Double test = new Double(6.5);
- @Tunable(description="your foot size", group={"stuff2"})
- public BoundedDouble footSize = new BoundedDouble(5.0, 8.5, 13.5, true,
false);
-
- @Tunable(description="the number of children you
have",flag={Param.slider})
- public BoundedInteger kids = new BoundedInteger(0, 1, 10, true, false);
-
+// @Tunable(description="your foot size", group={"stuff2"})
+// public BoundedDouble footSize = new BoundedDouble(5.0, 8.5, 13.5, true,
false);
+//
+// @Tunable(description="the number of children you
have",flag={Param.slider})
+// public BoundedInteger kids = new BoundedInteger(0, 1, 10, true, false);
+//
@Tunable(description="Month",group={"Today's date"})
public ListMultipleSelection<String> monthNames = new
ListMultipleSelection<String>("January","February","March","April","May","June","July","August","September","October","November","December");
Modified:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/fileChoose.java
===================================================================
---
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/fileChoose.java
2009-04-02 14:55:36 UTC (rev 16417)
+++
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/fileChoose.java
2009-04-02 14:55:52 UTC (rev 16418)
@@ -3,22 +3,13 @@
import java.io.File;
import org.cytoscape.work.Tunable;
-import org.cytoscape.work.util.myFile;
public class fileChoose implements Command {
@Tunable(description = "File example",group={"Import Network File"})
- public myFile myfile;
-
+ public File file;
- public fileChoose(){
- File[] files = new File[1];
- File file = new File("");
- myfile = new myFile(file);
- }
-
-
public void execute() {}
}
Modified:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/input.java
===================================================================
---
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/input.java
2009-04-02 14:55:36 UTC (rev 16417)
+++
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/input.java
2009-04-02 14:55:52 UTC (rev 16418)
@@ -27,16 +27,16 @@
public BoundedInteger bounded = new BoundedInteger(0,45,130,false,true);
- @Tunable(description = "Linkage",group={"Hierarchical cluster
Settings"})
+ @Tunable(description = "Linkage",group={"Hierarchical cluster
Settings",""},alignment={Param.vertical,Param.horizontal})
public ListSingleSelection<String> linkages = new
ListSingleSelection<String>("pairwise average-linkage","pairwise
single-linkage","pairwise maximum-linkage","pairwise centroid-linkage");
- @Tunable(description = "Distance Metric",group={"Hierarchical cluster
Settings"})
+ @Tunable(description = "Distance Metric",group={"Hierarchical cluster
Settings",""})
public ListSingleSelection<String> distances = new
ListSingleSelection<String>("Euclidean Distance","City block distance","Pearson
correlation","Pearson correlation, absolute value");
@Tunable(description="Array sources",group={"Hierarchical cluster
Settings","Source for array data"})
public ListMultipleSelection<String> sources = new
ListMultipleSelection<String>("node.degree","node.gal1RGexp","node.gal1RGsig","node.gal4RGexp","node.gal4RGsig","node.gal80RGexp");
- @Tunable(description="Cluster attributes as well as
nodes",group={"Hierarchical cluster Settings"})
+ @Tunable(description="Cluster attributes as well as
nodes",group={"Hierarchical cluster Settings"},alignment={Param.vertical})
public Boolean bool = new Boolean(false);
Added:
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/proxy.java
===================================================================
---
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/proxy.java
2009-04-02 14:55:36 UTC (rev 16417)
+++
csplugins/trunk/pasteur/mathieu/tunables2/src/main/java/org/cytoscape/command/proxy.java
2009-04-02 14:55:52 UTC (rev 16418)
@@ -0,0 +1,33 @@
+package org.cytoscape.command;
+
+
+import org.cytoscape.work.Tunable;
+import org.cytoscape.work.Tunable.Param;
+import org.cytoscape.work.util.ListSingleSelection;
+
+public class proxy implements Command{
+
+// @TunablesValidator
+// TunablesValidator validator = new MyValidator();
+
+ @Tunable(description="Type")
+ public ListSingleSelection<String> type = new
ListSingleSelection<String>("direct","http","socks");
+
+ @Tunable(description="Host
name",group={""},dependsOn="type!=direct",alignment={Param.horizontal})
+ public String hostname="";
+
+
@Tunable(description="Port",group={""},dependsOn="type!=direct",alignment={Param.horizontal})
+ public int port;
+
+ public void execute() {
+ }
+
+// class MyValidator implements TunablesValidator
+// {
+// public String validate()
+// {
+//
+// }
+// }
+
+}
\ No newline at end of file
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