Author: ghuck
Date: 2009-06-26 08:33:11 -0700 (Fri, 26 Jun 2009)
New Revision: 17108
Modified:
csplugins/trunk/soc/ghuck/plugin/build.xml
csplugins/trunk/soc/ghuck/plugin/src/GpuLayout.java
Log:
Started coding plugin for Cytoscape 2.6.2.
Modified: csplugins/trunk/soc/ghuck/plugin/build.xml
===================================================================
--- csplugins/trunk/soc/ghuck/plugin/build.xml 2009-06-26 14:32:27 UTC (rev
17107)
+++ csplugins/trunk/soc/ghuck/plugin/build.xml 2009-06-26 15:33:11 UTC (rev
17108)
@@ -82,7 +82,7 @@
<!-- If plugin.prop exist, copy it to build directory -->
<target name="copy_plugin_prop" if="plugin.prop.present">
- <copy todir="${build.dir}/cytoscape/tutorial01"
file="${root.dir}/plugin.props"/>
+ <copy todir="${build.dir}/" file="${root.dir}/plugin.props"/>
</target>
<!-- If there are any image files, copy them to build directory -->
Modified: csplugins/trunk/soc/ghuck/plugin/src/GpuLayout.java
===================================================================
--- csplugins/trunk/soc/ghuck/plugin/src/GpuLayout.java 2009-06-26 14:32:27 UTC
(rev 17107)
+++ csplugins/trunk/soc/ghuck/plugin/src/GpuLayout.java 2009-06-26 15:33:11 UTC
(rev 17108)
@@ -1,6 +1,25 @@
+/**************************************************************************************
+Copyright (C) Apeksha Godiyal, 2008
+Copyright (C) Gerardo Huck, 2009
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+See licence.h for more information.
+**************************************************************************************/
+
+
import java.util.*;
import java.awt.event.ActionEvent;
import javax.swing.JOptionPane;
@@ -17,110 +36,100 @@
import cytoscape.view.CyNetworkView;
import cytoscape.data.Semantics;
+import cytoscape.plugin.CytoscapePlugin;
+import cytoscape.view.cytopanels.CytoPanelImp;
+import javax.swing.SwingConstants;
+import javax.swing.JPanel;
+
+
+
/**
*/
-public class GpuLayout extends CytoscapePlugin {
-
+public class GpuLayout extends CytoscapePlugin
+ //implements CyGroupViewer,
+ //NodeContextMenuListener,
+ //PropertyChangeListener
+{
/**
* This constructor creates an action and adds it to the Plugins menu.
*/
public GpuLayout() {
- // Show message on screen
- String message = "Hello World!";
- //System.out.println(message);
- // use the CytoscapeDesktop as parent for a Swing dialog
+
+ /* Show message on screen */
+
+ String message = "GPU Graph Layout Loaded!";
+
+ // Use the CytoscapeDesktop as parent for a Swing dialog
JOptionPane.showMessageDialog( Cytoscape.getDesktop(), message);
+
+ /* Add Button to Menu */
+
//create a new action to respond to menu activation
GpuLayoutAction action = new GpuLayoutAction();
+
//set the preferred menu
- action.setPreferredMenu("Layouts");
+ action.setPreferredMenu("Layout");
+
//and add it to the menus
- Cytoscape.getDesktop().getCyMenus().addAction(action);
+ Cytoscape.getDesktop().getCyMenus().addAction(action);
+
}
+
+ class MyPanel extends JPanel {
+ public MyPanel() {
+ }
+ }
+
+
+
+
/**
* Gives a description of this plugin.
*/
- public String describe() {
+ /* public String describe() {
StringBuffer sb = new StringBuffer();
sb.append("Bla Bla... ");
sb.append(" more Bla.. ");
return sb.toString();
}
+ */
+
/**
* This class gets attached to the menu item.
*/
- public class GpuLayoutAction extends CytoscapeAction {
-
- /**
- * The constructor sets the text that should appear on the menu item.
- */
- public GpuLayoutAction() {super("GPU Layout");}
-
- /**
- * This method is called when the user selects the menu item.
- */
- public void actionPerformed(ActionEvent ae) {
- //get the network object; this contains the graph
- CyNetwork network = Cytoscape.getCurrentNetwork();
- //get the network view object
- CyNetworkView view = Cytoscape.getCurrentNetworkView();
- //can't continue if either of these is null
- if (network == null || view == null) {return;}
- //put up a dialog if there are no selected nodes
- if (view.getSelectedNodes().size() == 0) {
- JOptionPane.showMessageDialog(view.getComponent(),
- "Please select one or more nodes.");
- }
-
- //a container to hold the objects we're going to select
- Set nodeViewsToSelect = new HashSet();
- //iterate over every node view
- for (Iterator i = view.getSelectedNodes().iterator(); i.hasNext();
) {
- NodeView nView = (NodeView)i.next();
- //first get the corresponding node in the network
- CyNode node = (CyNode)nView.getNode();
- // get the neighbors of that node
- List neighbors = network.neighborsList(node);
- // and iterate over the neighbors
- for (Iterator ni = neighbors.iterator(); ni.hasNext(); ) {
- CyNode neighbor = (CyNode)ni.next();
- // get the view on this neighbor
- NodeView neighborView = view.getNodeView(neighbor);
- //and add that view to our container of objects to select
- nodeViewsToSelect.add(neighborView);
- }
- }
- //now go through our container and select each view
- for (Iterator i = nodeViewsToSelect.iterator(); i.hasNext(); ) {
- NodeView nView = (NodeView)i.next();
- nView.setSelected(true);
- }
- //tell the view to redraw since we've changed the selection
- view.redrawGraph(false, true);
- }
-
- /**
- * Gets the canonical name of the given node from the network object
- * and returns a String holding just the last letter of that name.
- *
- * Returns null if a valid name cannot be obtained.
- */
- private String getLastLetter(CyNetwork network, CyNode node) {
- String canonicalName = (String)network.getNodeAttributeValue(node,
Semantics.CANONICAL_NAME);
- //return nothing if we can't get a valid name
- if (canonicalName == null || canonicalName.length() == 0) {return
null;}
- //extract the last letter
- int length = canonicalName.length();
- String lastLetter = canonicalName.substring(length-1);
- return lastLetter;
- }
+ public class GpuLayoutAction extends CytoscapeAction
+ {
+
+ /**
+ * The constructor sets the text that should appear on the menu item.
+ */
+ public GpuLayoutAction() {
+ super("GPU Layout Plugin");
}
+
+ /**
+ * This method is called when the user selects the menu item.
+ */
+ public void actionPerformed(ActionEvent ae) {
+
+ /* Show message on screen */
+
+ String message = "Execute GPU Layout!";
+ // use the CytoscapeDesktop as parent for a Swing dialog
+ JOptionPane.showMessageDialog( Cytoscape.getDesktop(), message);
+
+
+
+
+ }
+
+ }
}
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