Author: chinmoy
Date: 2009-06-26 10:32:24 -0700 (Fri, 26 Jun 2009)
New Revision: 17110
Modified:
csplugins/trunk/soc/chinmoy/phylotree/tests/org/cytoscape/phylotree/parser/PhylipTreeImplTest.java
Log:
Modified:
csplugins/trunk/soc/chinmoy/phylotree/tests/org/cytoscape/phylotree/parser/PhylipTreeImplTest.java
===================================================================
---
csplugins/trunk/soc/chinmoy/phylotree/tests/org/cytoscape/phylotree/parser/PhylipTreeImplTest.java
2009-06-26 17:32:04 UTC (rev 17109)
+++
csplugins/trunk/soc/chinmoy/phylotree/tests/org/cytoscape/phylotree/parser/PhylipTreeImplTest.java
2009-06-26 17:32:24 UTC (rev 17110)
@@ -12,23 +12,53 @@
public void setUp() {
- String treeStr = "XXXX";
- PhylipTreeImpl treeParser = new PhylipTreeImpl(treeStr);
+ treeStr = "(B:9,(A:8,C:7,E:6),D:5);";
+ treeParser = new PhylipTreeImpl(treeStr);
}
public void testGetNodeList() {
- List nodeList = treeParser.getNodeList();
+ List<PhylotreeNode> nodeList = treeParser.getNodeList();
- assertEquals("","");
+ // Test number of nodes
+ assertEquals(7,nodeList.size());
+
+ // Test names of first and second to last nodes created
+ assertEquals("E", nodeList.get(0).getName());
+ assertEquals("B",nodeList.get(nodeList.size()-2).getName());
+
+
}
public void testGetEdges() {
+
+ // Test the number of edges the first parent node has
+ List<PhylotreeNode> nodeList = treeParser.getNodeList();
+ List<PhylotreeEdge> edgeList =
treeParser.getEdges(nodeList.get(4));
+
+ assertEquals(4, edgeList.size());
+
+
+
}
public void testGetEdgeAttribute() {
+ List<PhylotreeNode> nodeList = treeParser.getNodeList();
+ List<PhylotreeEdge> edgeList =
treeParser.getEdges(nodeList.get(0));
+
+ // Test edge lengths of the first node
+ assertEquals(6.0,
treeParser.getEdgeAttribute(edgeList.get(0)).get(0));
+
+ // Test edge lengths of the first parent node
+ edgeList = treeParser.getEdges(nodeList.get(4));
+
+ assertEquals(6.0,
treeParser.getEdgeAttribute(edgeList.get(0)).get(0));
+ assertEquals(7.0,
treeParser.getEdgeAttribute(edgeList.get(1)).get(0));
+ assertEquals(8.0,
treeParser.getEdgeAttribute(edgeList.get(2)).get(0));
+ assertEquals(0.0,
treeParser.getEdgeAttribute(edgeList.get(3)).get(0));
+
}
}
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