Author: noelr
Date: 2009-07-09 06:53:38 -0700 (Thu, 09 Jul 2009)
New Revision: 17280
Added:
cytoscape/trunk/testData/XGMMLWriterTestFile01a.xgmml
cytoscape/trunk/testData/XGMMLWriterTestFile01b.xgmml
cytoscape/trunk/testData/XGMMLWriterTestFile02a.xgmml
cytoscape/trunk/testData/XGMMLWriterTestFile02b.xgmml
cytoscape/trunk/testData/XGMMLWriterTestFile02c.xgmml
cytoscape/trunk/tests/cytoscape/data/writers/XGMMLWriterTest.java
Modified:
cytoscape/trunk/src/cytoscape/data/writers/XGMMLWriter.java
Log:
Fixes, tests and data for bugs 1938 and 2020
Modified: cytoscape/trunk/src/cytoscape/data/writers/XGMMLWriter.java
===================================================================
--- cytoscape/trunk/src/cytoscape/data/writers/XGMMLWriter.java 2009-07-09
13:32:12 UTC (rev 17279)
+++ cytoscape/trunk/src/cytoscape/data/writers/XGMMLWriter.java 2009-07-09
13:53:38 UTC (rev 17280)
@@ -167,7 +167,8 @@
*/
public class XGMMLWriter {
// XML preamble information
- private static final String XML_STRING = "<?xml version=\"1.0\"
encoding=\"UTF-8\" standalone=\"yes\"?>";
+ public static final String ENCODING = "UTF-8";
+ private static final String XML_STRING = "<?xml version=\"1.0\"
encoding=\"" + ENCODING + "\" standalone=\"yes\"?>";
private static final String[] NAMESPACES = {
"xmlns:dc=\"http://purl.org/dc/elements/1.1/\"";,
@@ -213,6 +214,11 @@
*/
public static final String GRAPH_VIEW_CENTER_Y = "GRAPH_VIEW_CENTER_Y";
+ /**
+ *
+ */
+ public static final String ENCODE_PROPERTY =
"cytoscape.encode.xgmml.attributes";
+
private CyAttributes nodeAttributes;
private CyAttributes edgeAttributes;
private CyAttributes networkAttributes;
@@ -229,7 +235,9 @@
private String indentString = "";
private Writer writer = null;
- /**
+ private boolean doFullEncoding;
+
+ /**
* Constructor.<br>
* Initialize data objects to be saved in XGMML file.<br>
*
@@ -258,6 +266,8 @@
// Create our indent string (480 blanks);
for (int i = 0; i < 20; i++)
indentString += " ";
+
+ doFullEncoding = Boolean.valueOf(System.getProperty(ENCODE_PROPERTY,
"true"));
}
/**
@@ -471,8 +481,10 @@
depth--; writeElement("</att>\n");
}
- // Output the node graphics if we have a view
- writeNodeGraphics(node,
(NodeView)networkView.getNodeView(node));
+ if (networkView != null) {
+ // Output the node graphics if we have a view
+ writeNodeGraphics(node, (NodeView)networkView.getNodeView(node));
+ }
depth--;
writeElement("</node>\n");
@@ -657,8 +669,10 @@
writeAttribute(curEdge.getIdentifier(),
edgeAttributes, edgeAttNames[att]);
}
- // Write the edge graphics
- writeEdgeGraphics(curEdge,
(EdgeView)networkView.getEdgeView(curEdge));
+ if (networkView != null) {
+ // Write the edge graphics
+ writeEdgeGraphics(curEdge,
(EdgeView)networkView.getEdgeView(curEdge));
+ }
depth--;
writeElement("</edge>\n");
@@ -1153,25 +1167,60 @@
* @return the quoted string
*/
private String quote(String str) {
- // Find and replace any "magic" characters
- if (str.contains("&")) {
- str = str.replaceAll("&", "&");
- }
- if (str.contains("\"")) {
- str = str.replaceAll("\"", """);
- }
- if (str.contains("'")) {
- str = str.replaceAll("\'", "'");
- }
- if (str.contains("<")) {
- str = str.replaceAll("<", "<");
- }
- if (str.contains(">")) {
- str = str.replaceAll(">", ">");
- }
- return "\""+str+"\"";
+ // Find and replace any "magic", control, non-printable etc.
characters
+ // For maximum safety, everything other than printable ASCII (0x20
thru 0x7E) is converted into a character entity
+
+ StringBuilder sb;
+
+ sb = new StringBuilder(str.length());
+ sb.append('"');
+ for (int i = 0; i < str.length(); i++) {
+ char c;
+
+ c = str.charAt(i);
+ if ((c < ' ') || (c > '~'))
+ {
+ if (doFullEncoding) {
+ sb.append("&#");
+ sb.append(Integer.toHexString((int)c));
+ sb.append(";");
+ }
+ else {
+ sb.append(c);
+ }
+ }
+ else if (c == '"') {
+ sb.append(""");
+ }
+ else if (c == '\'') {
+ sb.append("'");
+ }
+ else if (c == '&') {
+ sb.append("&");
+ }
+ else if (c == '<') {
+ sb.append("<");
+ }
+ else if (c == '>') {
+ sb.append(">");
+ }
+ else {
+ sb.append(c);
+ }
+ }
+ sb.append('"');
+
+ return sb.toString();
}
+ public boolean isDoFullEncoding() {
+ return doFullEncoding;
+ }
+
+ public void setDoFullEncoding(boolean doFullEnc) {
+ doFullEncoding = doFullEnc;
+ }
+
/**
* Determines if object has key in multihashmap
*
Added: cytoscape/trunk/testData/XGMMLWriterTestFile01a.xgmml
===================================================================
--- cytoscape/trunk/testData/XGMMLWriterTestFile01a.xgmml
(rev 0)
+++ cytoscape/trunk/testData/XGMMLWriterTestFile01a.xgmml 2009-07-09
13:53:38 UTC (rev 17280)
@@ -0,0 +1,40 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<graph label="Network 0" xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns:xlink="http://www.w3.org/1999/xlink";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:cy="http://www.cytoscape.org"; xmlns="http://www.cs.rpi.edu/XGMML";
directed="1">
+ <att name="documentVersion" value="1.1"/>
+ <att name="networkMetadata">
+ <rdf:RDF>
+ <rdf:Description rdf:about="http://www.cytoscape.org/";>
+ <dc:type>Protein-Protein Interaction</dc:type>
+ <dc:description>N/A</dc:description>
+ <dc:identifier>N/A</dc:identifier>
+ <dc:date>2009-06-15 16:45:41</dc:date>
+ <dc:title>Network 0</dc:title>
+ <dc:source>http://www.cytoscape.org/</dc:source>
+ <dc:format>Cytoscape-XGMML</dc:format>
+ </rdf:Description>
+ </rdf:RDF>
+ </att>
+ <att type="string" name="backgroundColor" value="#ccccff"/>
+ <att type="real" name="GRAPH_VIEW_ZOOM" value="1.0"/>
+ <att type="real" name="GRAPH_VIEW_CENTER_X" value="0.0"/>
+ <att type="real" name="GRAPH_VIEW_CENTER_Y" value="0.0"/>
+ <node label="node1" id="-2">
+ <att type="string" name="testString" value="This is a test string for
node1"/>
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="canonicalName" value="node1"/>
+ <graphics type="ELLIPSE" h="40.0" w="40.0" x="63.0" y="-46.0"
fill="#ff9999" width="1" outline="#666666" cy:nodeTransparency="1.0"
cy:nodeLabelFont="SansSerif.bold-0-12" cy:borderLineType="solid"/>
+ </node>
+ <node label="node0" id="-1">
+ <att type="string" name="testString" value="This is a test string for
node0"/>
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="canonicalName" value="node0"/>
+ <graphics type="ELLIPSE" h="40.0" w="40.0" x="-122.0" y="-48.0"
fill="#ff9999" width="1" outline="#666666" cy:nodeTransparency="1.0"
cy:nodeLabelFont="SansSerif.bold-0-12" cy:borderLineType="solid"/>
+ </node>
+ <edge label="node0 (DirectedEdge) node1" source="-1" target="-2">
+ <att type="string" name="EDGE_TYPE" value="DirectedEdge"/>
+ <att type="string" name="testString" value="This is a test string for the
edge"/>
+ <att type="string" name="interaction" value="DirectedEdge"/>
+ <att type="string" name="canonicalName" value="node0 (DirectedEdge)
node1"/>
+ <graphics width="1" fill="#0000ff" cy:sourceArrow="0" cy:targetArrow="0"
cy:sourceArrowColor="#000000" cy:targetArrowColor="#000000"
cy:edgeLabelFont="Default-0-10" cy:edgeLineType="SOLID"
cy:curved="STRAIGHT_LINES"/>
+ </edge>
+</graph>
Added: cytoscape/trunk/testData/XGMMLWriterTestFile01b.xgmml
===================================================================
--- cytoscape/trunk/testData/XGMMLWriterTestFile01b.xgmml
(rev 0)
+++ cytoscape/trunk/testData/XGMMLWriterTestFile01b.xgmml 2009-07-09
13:53:38 UTC (rev 17280)
@@ -0,0 +1,33 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<graph label="Network 0" xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns:xlink="http://www.w3.org/1999/xlink";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:cy="http://www.cytoscape.org"; xmlns="http://www.cs.rpi.edu/XGMML";
directed="1">
+ <att name="documentVersion" value="1.1"/>
+ <att name="networkMetadata">
+ <rdf:RDF>
+ <rdf:Description rdf:about="http://www.cytoscape.org/";>
+ <dc:type>Protein-Protein Interaction</dc:type>
+ <dc:description>N/A</dc:description>
+ <dc:identifier>N/A</dc:identifier>
+ <dc:date>2009-06-15 16:45:41</dc:date>
+ <dc:title>Network 0</dc:title>
+ <dc:source>http://www.cytoscape.org/</dc:source>
+ <dc:format>Cytoscape-XGMML</dc:format>
+ </rdf:Description>
+ </rdf:RDF>
+ </att>
+ <node label="node0" id="-2">
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="testString" value="This is a test string for
node0"/>
+ <att type="string" name="canonicalName" value="node0"/>
+ </node>
+ <node label="node1" id="-1">
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="testString" value="This is a test string for
node1"/>
+ <att type="string" name="canonicalName" value="node1"/>
+ </node>
+ <edge label="node0 (DirectedEdge) node1" source="-2" target="-1">
+ <att type="string" name="EDGE_TYPE" value="DirectedEdge"/>
+ <att type="string" name="testString" value="This is a test string for the
edge"/>
+ <att type="string" name="interaction" value="DirectedEdge"/>
+ <att type="string" name="canonicalName" value="node0 (DirectedEdge)
node1"/>
+ </edge>
+</graph>
Added: cytoscape/trunk/testData/XGMMLWriterTestFile02a.xgmml
===================================================================
--- cytoscape/trunk/testData/XGMMLWriterTestFile02a.xgmml
(rev 0)
+++ cytoscape/trunk/testData/XGMMLWriterTestFile02a.xgmml 2009-07-09
13:53:38 UTC (rev 17280)
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<graph label="Network 0" xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns:xlink="http://www.w3.org/1999/xlink";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:cy="http://www.cytoscape.org"; xmlns="http://www.cs.rpi.edu/XGMML";
directed="1">
+ <att name="documentVersion" value="1.1"/>
+ <att name="networkMetadata">
+ <rdf:RDF>
+ <rdf:Description rdf:about="http://www.cytoscape.org/";>
+ <dc:type>Protein-Protein Interaction</dc:type>
+ <dc:description>N/A</dc:description>
+ <dc:identifier>N/A</dc:identifier>
+ <dc:date>2009-06-15 16:45:41</dc:date>
+ <dc:title>Network 0</dc:title>
+ <dc:source>http://www.cytoscape.org/</dc:source>
+ <dc:format>Cytoscape-XGMML</dc:format>
+ </rdf:Description>
+ </rdf:RDF>
+ </att>
+ <node label="node0" id="-2">
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="testString" value="This is a test string
for\tnode0\n"/>
+ <att type="string" name="canonicalName" value="node0"/>
+ </node>
+</graph>
Added: cytoscape/trunk/testData/XGMMLWriterTestFile02b.xgmml
===================================================================
--- cytoscape/trunk/testData/XGMMLWriterTestFile02b.xgmml
(rev 0)
+++ cytoscape/trunk/testData/XGMMLWriterTestFile02b.xgmml 2009-07-09
13:53:38 UTC (rev 17280)
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<graph label="Network 0" xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns:xlink="http://www.w3.org/1999/xlink";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:cy="http://www.cytoscape.org"; xmlns="http://www.cs.rpi.edu/XGMML";
directed="1">
+ <att name="documentVersion" value="1.1"/>
+ <att name="networkMetadata">
+ <rdf:RDF>
+ <rdf:Description rdf:about="http://www.cytoscape.org/";>
+ <dc:type>Protein-Protein Interaction</dc:type>
+ <dc:description>N/A</dc:description>
+ <dc:identifier>N/A</dc:identifier>
+ <dc:date>2009-06-15 16:45:41</dc:date>
+ <dc:title>Network 0</dc:title>
+ <dc:source>http://www.cytoscape.org/</dc:source>
+ <dc:format>Cytoscape-XGMML</dc:format>
+ </rdf:Description>
+ </rdf:RDF>
+ </att>
+ <node label="node0" id="-1">
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="testString" value="This is a test string
for	node0
"/>
+ <att type="string" name="canonicalName" value="node0"/>
+ </node>
+</graph>
Added: cytoscape/trunk/testData/XGMMLWriterTestFile02c.xgmml
===================================================================
--- cytoscape/trunk/testData/XGMMLWriterTestFile02c.xgmml
(rev 0)
+++ cytoscape/trunk/testData/XGMMLWriterTestFile02c.xgmml 2009-07-09
13:53:38 UTC (rev 17280)
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<graph label="Network 0" xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns:xlink="http://www.w3.org/1999/xlink";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:cy="http://www.cytoscape.org"; xmlns="http://www.cs.rpi.edu/XGMML";
directed="1">
+ <att name="documentVersion" value="1.1"/>
+ <att name="networkMetadata">
+ <rdf:RDF>
+ <rdf:Description rdf:about="http://www.cytoscape.org/";>
+ <dc:type>Protein-Protein Interaction</dc:type>
+ <dc:description>N/A</dc:description>
+ <dc:identifier>N/A</dc:identifier>
+ <dc:date>2009-06-15 16:45:41</dc:date>
+ <dc:title>Network 0</dc:title>
+ <dc:source>http://www.cytoscape.org/</dc:source>
+ <dc:format>Cytoscape-XGMML</dc:format>
+ </rdf:Description>
+ </rdf:RDF>
+ </att>
+ <node label="node0" id="-2">
+ <att type="string" name="NODE_TYPE" value="DefaultNode"/>
+ <att type="string" name="testString" value="This is a test string for
node0\nAnother sentence$©ﻸ"/>
+ <att type="string" name="canonicalName" value="node0"/>
+ </node>
+</graph>
Added: cytoscape/trunk/tests/cytoscape/data/writers/XGMMLWriterTest.java
===================================================================
--- cytoscape/trunk/tests/cytoscape/data/writers/XGMMLWriterTest.java
(rev 0)
+++ cytoscape/trunk/tests/cytoscape/data/writers/XGMMLWriterTest.java
2009-07-09 13:53:38 UTC (rev 17280)
@@ -0,0 +1,182 @@
+/*
+ File: XGMMLWriterTest.java
+
+ Copyright (c) 2009, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package cytoscape.data.writers;
+
+import cytoscape.CyNetwork;
+import cytoscape.Cytoscape;
+import cytoscape.data.CyAttributes;
+import cytoscape.data.CyAttributesImpl;
+
+import cytoscape.data.readers.XGMMLReader;
+
+import java.io.FileInputStream;
+import junit.framework.TestCase;
+
+import java.io.FileReader;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.io.StringWriter;
+
+import java.net.URISyntaxException;
+
+
+/**
+ * Tests the CyAttributesWriter Class.
+ *
+ * Note 2/6/2008 by kono:
+ * This code tests CyAttributesWriter2, not the original one.
+ *
+ */
+public class XGMMLWriterTest extends TestCase {
+ public void testXGMMLWriterRoundTrip1() throws IOException,
URISyntaxException {
+ // No characters that are affecting by full encoding, so only one test.
+ compareRoundTrip("testData/XGMMLWriterTestFile01a.xgmml",
"testData/XGMMLWriterTestFile01b.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2aFullEncodingDefault() throws
IOException, URISyntaxException {
+ System.clearProperty(XGMMLWriter.ENCODE_PROPERTY);
+ compareRoundTrip("testData/XGMMLWriterTestFile02a.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2aFullEncodingOn() throws IOException,
URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "true");
+ compareRoundTrip("testData/XGMMLWriterTestFile02a.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2aFullEncodingOff() throws
IOException, URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "false");
+ compareRoundTrip("testData/XGMMLWriterTestFile02a.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2bFullEncodingDefault() throws
IOException, URISyntaxException {
+ System.clearProperty(XGMMLWriter.ENCODE_PROPERTY);
+ compareRoundTrip("testData/XGMMLWriterTestFile02b.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2bFullEncodingOn() throws IOException,
URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "true");
+ compareRoundTrip("testData/XGMMLWriterTestFile02b.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2bFullEncodingOff() throws
IOException, URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "false");
+ compareRoundTrip("testData/XGMMLWriterTestFile02b.xgmml",
"testData/XGMMLWriterTestFile02a.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2cFullEncodingDefault() throws
IOException, URISyntaxException {
+ System.clearProperty(XGMMLWriter.ENCODE_PROPERTY);
+ compareRoundTrip("testData/XGMMLWriterTestFile02c.xgmml",
"testData/XGMMLWriterTestFile02d.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2cFullEncodingOn() throws IOException,
URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "true");
+ compareRoundTrip("testData/XGMMLWriterTestFile02c.xgmml",
"testData/XGMMLWriterTestFile02d.xgmml");
+ }
+
+ public void testXGMMLWriterRoundTrip2cFullEncodingOff() throws
IOException, URISyntaxException {
+ System.setProperty(XGMMLWriter.ENCODE_PROPERTY, "false");
+ compareRoundTrip("testData/XGMMLWriterTestFile02c.xgmml",
"testData/XGMMLWriterTestFile02c.xgmml");
+ }
+
+ private void compareRoundTrip(String fileIn, String fileToCompare) throws
IOException, URISyntaxException {
+ XGMMLReader r;
+ CyNetwork cn;
+ StringWriter sw;
+ XGMMLWriter w;
+ String output;
+
+ r = new XGMMLReader(fileIn);
+ cn = Cytoscape.createNetwork(r, false, null);
+
+ sw = new StringWriter();
+ w = new XGMMLWriter(cn, null);
+ w.write(sw);
+ sw.close();
+
+ output = sw.toString();
+
+ compareFilesByLine(fileToCompare, output);
+ }
+
+ private void compareFilesByLine(String fileToCompare, String output)
throws IOException {
+ String[] linesGot;
+ StringBuilder sb;
+ FileInputStream fis;
+ InputStreamReader isr;
+ int c;
+ String content;
+ String[] linesExptd;
+
+ linesGot = output.split("\n");
+
+ for (String line : linesGot) {
+ System.out.println(line);
+ }
+
+ sb = new StringBuilder();
+ fis = new FileInputStream(fileToCompare);
+ isr = new InputStreamReader(fis, XGMMLWriter.ENCODING);
+ c = isr.read();
+ while (c != -1)
+ {
+ sb.append((char)c);
+ c = isr.read();
+ }
+ isr.close();
+ content = sb.toString();
+ System.out.println("Read " +
content.getBytes(XGMMLWriter.ENCODING).length + " bytes");
+ linesExptd = content.split("\n");
+ assertTrue("XGMMLWriter: No. of lines, expect " + linesExptd.length +
", got" + linesGot.length, linesExptd.length == linesGot.length);
+
+ for (int i = 0; i < linesExptd.length; i++) {
+ // <dc:date> value will be different so skip this line
+ if (linesExptd[i].contains("<dc:date>")) {
+ continue;
+ }
+ System.out.println("Exp (" + linesExptd[i].length() + ")>" +
linesExptd[i]);
+ System.out.println("Got (" + linesGot[i].length() + ")>" +
linesGot[i]);
+ assertEquals(linesExptd[i], linesGot[i]);
+ }
+ }
+
+ /**
+ * Runs just this one unit test.
+ */
+ public static void main(String[] args) {
+ junit.textui.TestRunner.run(XGMMLWriterTest.class);
+ }
+}
--~--~---------~--~----~------------~-------~--~----~
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected]
To unsubscribe from this group, send email to
[email protected]
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en
-~----------~----~----~----~------~----~------~--~---
