Author: pwang
Date: 2009-07-21 12:19:22 -0700 (Tue, 21 Jul 2009)
New Revision: 17502
Added:
csplugins/trunk/ucsd/mes/groupResults/src/org/cytoscape/groups/results/GroupHandler.java
Log:
Original creation
Added:
csplugins/trunk/ucsd/mes/groupResults/src/org/cytoscape/groups/results/GroupHandler.java
===================================================================
---
csplugins/trunk/ucsd/mes/groupResults/src/org/cytoscape/groups/results/GroupHandler.java
(rev 0)
+++
csplugins/trunk/ucsd/mes/groupResults/src/org/cytoscape/groups/results/GroupHandler.java
2009-07-21 19:19:22 UTC (rev 17502)
@@ -0,0 +1,221 @@
+package org.cytoscape.groups.results;
+
+// System imports
+import giny.view.NodeView;
+
+import java.awt.GridBagConstraints;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.lang.reflect.Method;
+import java.util.ArrayList;
+import java.util.Iterator;
+import java.util.List;
+
+import javax.swing.JButton;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.SwingConstants;
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+
+import metaNodePlugin2.model.MetaNode;
+
+//import metaNodePlugin2.model.MetaNode;
+
+import cytoscape.CyNetwork;
+import cytoscape.CyNode;
+import cytoscape.Cytoscape;
+import cytoscape.util.CyNetworkNaming;
+import cytoscape.view.CyNetworkView;
+
+//Cytoscape group system imports
+import cytoscape.groups.CyGroup;
+import cytoscape.groups.CyGroupViewer;
+import cytoscape.groups.CyGroupViewer.ChangeType;
+
+import cytoscape.groups.CyGroupManager;
+import cytoscape.groups.CyGroupChangeListener;
+
+import cytoscape.view.cytopanels.CytoPanel;
+import cytoscape.view.cytopanels.CytoPanelState;
+import org.cytoscape.groups.results.LayoutRegion;
+import ding.view.DGraphView;
+
+/**
+ * The GroupPanel is the implementation for the Cytopanel that presents the
+ * group list mechanism to the user.
+ */
+public class GroupHandler implements
+ CyGroupChangeListener, CyGroupViewer {
+
+ public String viewerName = "moduleFinderViewer";
+ private static boolean registeredWithGroupPanel = false;
+
+ // Controlling variables
+ public static boolean multipleEdges = false;
+ public static boolean recursive = true;
+
+ private Method updateMethod = null;
+ private CyGroupViewer namedSelectionViewer = null;
+
+ // State values
+ public static final int EXPANDED = 1;
+ public static final int COLLAPSED = 2;
+
+
+ public GroupHandler() {
+ super();
+
+ CyGroupManager.addGroupChangeListener(this);
+
+ //register groupViewer
+ CyGroupManager.registerGroupViewer(this);
+
+ }
+
+
+ // Determine the region (rectangle:x,y,w,h) for all nodes in a given
group
+ private double[] getRectValues(CyGroup pGroup){
+
+ Iterator it = pGroup.getNodeIterator();
+
+ CyNode node = (CyNode) it.next();
+ NodeView nv =
Cytoscape.getCurrentNetworkView().getNodeView(node);
+
+ double minX = Double.POSITIVE_INFINITY;
+ double maxX = Double.NEGATIVE_INFINITY;
+ double minY = Double.POSITIVE_INFINITY;
+ double maxY = Double.NEGATIVE_INFINITY;
+
+ double scaleFactor =
Cytoscape.getCurrentNetworkView().getZoom();
+
+ DGraphView theView = (DGraphView)
Cytoscape.getCurrentNetworkView();
+
+ double w = theView.getComponent().getBounds().getWidth();
+ double h = theView.getComponent().getBounds().getHeight();
+
+ double xCenter = theView.getCenter().getX();
+ double yCenter = theView.getCenter().getY();
+
+ while (it.hasNext()){
+ node = (CyNode) it.next();
+ nv =
Cytoscape.getCurrentNetworkView().getNodeView(node);
+
+
+ if (nv.getXPosition() < minX){
+ minX = nv.getXPosition();
+ }
+ if (nv.getXPosition() > maxX){
+ maxX = nv.getXPosition();
+ }
+
+ if (nv.getYPosition() < minY){
+ minY = nv.getYPosition();
+ }
+ if (nv.getYPosition() > maxY){
+ maxY = nv.getYPosition();
+ }
+ }
+
+ double[] rectValues = new double[4];
+
+ rectValues[0] = w/2 - (xCenter - minX)*scaleFactor;
+ rectValues[1] = h/2 - (yCenter - minY)*scaleFactor;
+ rectValues[2] = (maxX - minX)*scaleFactor;
+ rectValues[3] = (maxY - minY)*scaleFactor;
+
+ return rectValues;
+ }
+
+
+
+ //required by CyGroupChangeListener
+ public void groupChanged(CyGroup group,
CyGroupChangeListener.ChangeType change) {
+ if ( change == CyGroupChangeListener.ChangeType.GROUP_CREATED )
{
+
+ System.out.println("\nGroupHandler: GROUP_CREATE");
+
+ //determine the rectangle region (x,y,w,h)
+ double[] region = getRectValues(group);
+
+ //Create LayoutRegion object
+ LayoutRegion layoutRegion = new
LayoutRegion(region[0],region[1],region[2],region[3], null, null);
+
+ } else if ( change ==
CyGroupChangeListener.ChangeType.GROUP_DELETED ) {
+ System.out.println("GroupHandler: GROUP_DELETED");
+
+ //resultPanel.removeGroup(group);
+ } else if ( change ==
CyGroupChangeListener.ChangeType.GROUP_MODIFIED ) {
+ System.out.println("GroupHandler: GROUP_MODIFIED");
+ } else {
+ System.err.println("unsupported change Group
ChangeType");
+ }
+ }
+
+ //
+ // These are required by the CyGroupViewer interface
+ /**
+ * Return the name of our viewer
+ *
+ * @return viewer name
+ */
+ public String getViewerName() { return viewerName; }
+
+
+ /**
+ * This is called when a new group has been created that
+ * we care about. If we weren't building our menu each
+ * time, this would be used to update the list of groups
+ * we present to the user.
+ *
+ * @param group the CyGroup that was just created
+ */
+ public void groupCreated(CyGroup group) {
+
+ System.out.println("groupCreated()");
+ }
+
+ /**
+ * This is called when a new group has been created that
+ * we care about. This version of the groupCreated
+ * method is called by XGMML and provides the CyNetworkView
+ * that is in the process of being created.
+ *
+ * @param group the CyGroup that was just created
+ * @param view the CyNetworkView that is being created
+ */
+ public void groupCreated(CyGroup group, CyNetworkView myview) {
+ System.out.println("groupCreated() Apple");
+
+ }
+
+ /**
+ * This is called when a group we care about is about to
+ * be deleted. If we weren't building our menu each
+ * time, this would be used to update the list of groups
+ * we present to the user.
+ *
+ * @param group the CyGroup that will be deleted
+ */
+ public void groupWillBeRemoved(CyGroup group) {
+ System.out.println("groupWillBeRemoved()");
+ }
+
+
+
+ /**
+ * This is called when a group we care about has been
+ * changed (usually node added or deleted).
+ *
+ * @param group the CyGroup that has changed
+ * @param node the CyNode that caused the change
+ * @param change the change that occured
+ */
+ public void groupChanged(CyGroup group, CyNode node,
CyGroupViewer.ChangeType change) {
+ System.out.println("groupChanged()");
+ }
+
+
+
+
+}
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