Author: kozo Date: 2009-08-10 16:42:49 -0700 (Mon, 10 Aug 2009) New Revision: 17767
Modified: csplugins/trunk/soc/kozo/sample-data/genetic_regulatory_layer.sif csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif Log: differentiate 1st layer TFs and 3rd layer proteins using "(TF)" ending of a TF (refs ticket:22) Modified: csplugins/trunk/soc/kozo/sample-data/genetic_regulatory_layer.sif =================================================================== --- csplugins/trunk/soc/kozo/sample-data/genetic_regulatory_layer.sif 2009-08-10 23:24:31 UTC (rev 17766) +++ csplugins/trunk/soc/kozo/sample-data/genetic_regulatory_layer.sif 2009-08-10 23:42:49 UTC (rev 17767) @@ -1,89 +1,89 @@ -AbrB rere ComK -AbrB rere SenS -AbrB rere SinR -CodY rere ComK -Hpr rere SinR -Rok rere ComK -YbaL rere Hpr -CcpA rere LicT -AbrB rere YvbA -TnrA rere GlnR -Spo0A rere AbrB -CcpA rere CcpC -CcpA rere KdgR -CcpA rere PhoP -CcpA rere TreR -CcpA rere DeoR -CcpA rere HutP -CodY rere HutP -PurR rere PyrR -YjbD rere YtlI -YrzC rere YtlI -CcpA rere ExuR -CcpA rere GntR -CcpB rere GntR -Spo0A rere FruR -TnrA rere DegU -PerR rere Fur -CcpA rere YsiA -NsrR rere Fnr -PhoP rere ResD -LexA rere LexA -GltC rere GltC -GltR rere GltR -YvbA rere YvbA -GlnR rere GlnR -AbrB rere AbrB -CcpC rere CcpC -YrxA rere YrxA -TenI rere TenI -SpoVT rere SpoVT -KdgR rere KdgR -AnsR rere AnsR -RocR rere RocR -CggR rere CggR -IolR rere IolR -Spo0A rere Spo0A -TreR rere TreR -YwfK rere YwfK -GabR rere GabR -DeoR rere DeoR -PurR rere PurR -ExuR rere ExuR -GntR rere GntR -AraR rere AraR -FruR rere FruR -PerR rere PerR -YsiA rere YsiA -HrcA rere HrcA -ArfM rere ArfM -AbrB rere Hpr -DegU rere ComK -Med rere ComK -SenS rere Hpr -Spo0A rere SinR -SpoIIID rere GerE -DegU rere LicT -Spo0A rere CcpC -ResD rere PhoP -DegU rere SacY -SacT rere SacY -AbrB rere HutP -TnrA rere PucR -ArfM rere HrcA -ResD rere Fnr -PhoP rere ResD -Fnr rere ArfM -ComK rere ComK -SenS rere SenS -LicT rere LicT -PhoP rere PhoP -Spo0A rere Spo0A -SacY rere SacY -Mta rere Mta -HutP rere HutP -DegU rere DegU -PucR rere PucR -TnrA rere TnrA -Fnr rere Fnr -ResD rere ResD +AbrB(TF) tftf ComK(TF) +AbrB(TF) tftf SenS(TF) +AbrB(TF) tftf SinR(TF) +CodY(TF) tftf ComK(TF) +Hpr(TF) tftf SinR(TF) +Rok(TF) tftf ComK(TF) +YbaL(TF) tftf Hpr(TF) +CcpA(TF) tftf LicT(TF) +AbrB(TF) tftf YvbA(TF) +TnrA(TF) tftf GlnR(TF) +Spo0A(TF) tftf AbrB(TF) +CcpA(TF) tftf CcpC(TF) +CcpA(TF) tftf KdgR(TF) +CcpA(TF) tftf PhoP(TF) +CcpA(TF) tftf TreR(TF) +CcpA(TF) tftf DeoR(TF) +CcpA(TF) tftf HutP(TF) +CodY(TF) tftf HutP(TF) +PurR(TF) tftf PyrR(TF) +YjbD(TF) tftf YtlI(TF) +YrzC(TF) tftf YtlI(TF) +CcpA(TF) tftf ExuR(TF) +CcpA(TF) tftf GntR(TF) +CcpB(TF) tftf GntR(TF) +Spo0A(TF) tftf FruR(TF) +TnrA(TF) tftf DegU(TF) +PerR(TF) tftf Fur(TF) +CcpA(TF) tftf YsiA(TF) +NsrR(TF) tftf Fnr(TF) +PhoP(TF) tftf ResD(TF) +LexA(TF) tftf LexA(TF) +GltC(TF) tftf GltC(TF) +GltR(TF) tftf GltR(TF) +YvbA(TF) tftf YvbA(TF) +GlnR(TF) tftf GlnR(TF) +AbrB(TF) tftf AbrB(TF) +CcpC(TF) tftf CcpC(TF) +YrxA(TF) tftf YrxA(TF) +TenI(TF) tftf TenI(TF) +SpoVT(TF) tftf SpoVT(TF) +KdgR(TF) tftf KdgR(TF) +AnsR(TF) tftf AnsR(TF) +RocR(TF) tftf RocR(TF) +CggR(TF) tftf CggR(TF) +IolR(TF) tftf IolR(TF) +Spo0A(TF) tftf Spo0A(TF) +TreR(TF) tftf TreR(TF) +YwfK(TF) tftf YwfK(TF) +GabR(TF) tftf GabR(TF) +DeoR(TF) tftf DeoR(TF) +PurR(TF) tftf PurR(TF) +ExuR(TF) tftf ExuR(TF) +GntR(TF) tftf GntR(TF) +AraR(TF) tftf AraR(TF) +FruR(TF) tftf FruR(TF) +PerR(TF) tftf PerR(TF) +YsiA(TF) tftf YsiA(TF) +HrcA(TF) tftf HrcA(TF) +ArfM(TF) tftf ArfM(TF) +AbrB(TF) tftf Hpr(TF) +DegU(TF) tftf ComK(TF) +Med(TF) tftf ComK(TF) +SenS(TF) tftf Hpr(TF) +Spo0A(TF) tftf SinR(TF) +SpoIIID(TF) tftf GerE(TF) +DegU(TF) tftf LicT(TF) +Spo0A(TF) tftf CcpC(TF) +ResD(TF) tftf PhoP(TF) +DegU(TF) tftf SacY(TF) +SacT(TF) tftf SacY(TF) +AbrB(TF) tftf HutP(TF) +TnrA(TF) tftf PucR(TF) +ArfM(TF) tftf HrcA(TF) +ResD(TF) tftf Fnr(TF) +PhoP(TF) tftf ResD(TF) +Fnr(TF) tftf ArfM(TF) +ComK(TF) tftf ComK(TF) +SenS(TF) tftf SenS(TF) +LicT(TF) tftf LicT(TF) +PhoP(TF) tftf PhoP(TF) +Spo0A(TF) tftf Spo0A(TF) +SacY(TF) tftf SacY(TF) +Mta(TF) tftf Mta(TF) +HutP(TF) tftf HutP(TF) +DegU(TF) tftf DegU(TF) +PucR(TF) tftf PucR(TF) +TnrA(TF) tftf TnrA(TF) +Fnr(TF) tftf Fnr(TF) +ResD(TF) tftf ResD(TF) Modified: csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif =================================================================== --- csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif 2009-08-10 23:24:31 UTC (rev 17766) +++ csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif 2009-08-10 23:42:49 UTC (rev 17767) @@ -1,449 +1,449 @@ -CcpA reg leuC -CcpA reg leuD -CodY reg leuC -CodY reg leuD -TnrA reg leuC -TnrA reg leuD -TrnS-Leu2 reg leuC -TrnS-Leu2 reg leuD -CcpA reg leuB -CodY reg leuB -TnrA reg leuB -TrnS-Leu2 reg leuB -GabR reg gabT -BirA reg bioW -CcpA reg licH -LicR reg licH -BirA reg bioF -CcpA reg ackA -CcpA reg ilvB -CcpA reg ilvH -CodY reg ilvB -CodY reg ilvH -TnrA reg ilvB -TnrA reg ilvH -TrnS-Leu2 reg ilvB -TrnS-Leu2 reg ilvH -Spo0A reg accA -Spo0A reg accD -CcpA reg mmgA -CcpA reg acsA -CodY reg acsA -CcpA reg mmgC -YsiA reg acdA -BirA reg bioA -PurR reg purB -PurR reg purA -PhoP reg phoA -PhoP reg phoB -PhoP reg phoB -TenA reg phoA -PucR reg pucH -CcpA reg uxaA -ExuR reg uxaA -MtrB reg trpD -Rho reg trpD -MtrB reg trpE -Rho reg trpE -MtrB reg pabB -MtrB reg pabA -AhrC reg rocF -RocR reg rocF -Spo0A reg rocF -AbrB reg asnH -SpoIIID reg asnO -PurR reg pyrB -PyrR reg pyrB -CcpA reg bglH -LicT reg bglH -YlpC reg fabF -YlpC reg fabHA -YlpC reg fabHB -AbrB reg carA -AbrB reg carB -AhrC reg carA -AhrC reg carB -PurR reg pyrAA -PurR reg pyrAB -PyrR reg pyrAA -PyrR reg pyrAB -CcpA reg citZ -CcpA reg mmgD -CcpC reg citZ -CitR reg citA -ArfM reg hemN -ArfM reg hemZ -Fnr reg hemZ -HrcA reg hemN -ResD reg hemZ -YrzC reg cysK -Spo0A reg cdd -CcpA reg dra -DeoR reg dra -BirA reg bioD -SpoVT reg lysA -MtrB reg folB -PurR reg pyrC -PyrR reg pyrC -MtrB reg sul -CodY reg ilvD -CcpA reg uxuA -ExuR reg uxuA -CggR reg eno -FruR reg fruK -Spo0A reg fruK -CcpA reg galK -CcpA reg galT -GltC reg gltA -GltC reg gltB -GltR reg gltA -GltR reg gltB -TnrA reg gltA -TnrA reg gltB -CggR reg gapA -YqzB reg gapB -CcpA reg eutD -SpoVT reg gdh -CcpA reg uxaC -ExuR reg uxaC -RocR reg rocG -Spo0A reg rocG -PerR reg hemL -PurR reg purF -GlnR reg glnA -TnrA reg glnA -PerR reg hemA -CcpA reg glpK -GlpP reg glpK -TenI reg goxB -PurR reg guaC -PucR reg guaD -AbrB reg hutH -CcpA reg hutH -CodY reg hutH -HutP reg hutH -MtrB reg trpC -Rho reg trpC -Fur reg dhbB -Fur reg dhbC -CcpA reg icd -CcpC reg icd -CcpA reg ilvC -CodY reg ilvC -TnrA reg ilvC -TrnS-Leu2 reg ilvC -AraR reg araA -CcpA reg araA -AnsR reg ansA -AnsR reg ansB -YrxA reg nadB -AraR reg araB -CcpA reg araB -AraR reg araD -CcpA reg araD -CcpA reg mdh -CcpC reg mdh -PurR reg folD -CcpA reg mmsA -IolR reg mmsA -YrzC reg mtn -AhrC reg rocD -RocR reg rocD -Spo0A reg rocD -AbrB reg argF -AhrC reg argF -PurR reg pyrE -PyrR reg pyrE -PurR reg pyrF -PyrR reg pyrF -BkdR reg ptb -CodY reg ptb -TnrA reg ptb -YqzB reg pckA -CggR reg pgk -CggR reg pgm -PurR reg purE -PurR reg purK -PurR reg purC -PurR reg purD -PurR reg purN -PurR reg purM -MtrB reg tyrA -Rho reg tyrA -AhrC reg rocA -RocR reg rocA -YofA reg pycA -AbrB reg rbsK -CcpA reg rbsK -ResD reg nrdE -ResD reg nrdF -ResD reg ymaA -GabR reg gabD -CcpA reg scoA -CcpA reg scoB -CcpA reg uxaB -ExuR reg uxaB -Spo0A reg tkt -CggR reg tpiA -MtrB reg trpA -MtrB reg trpB -Rho reg trpA -Rho reg trpB -MtrB reg hisC -Rho reg hisC -CodY reg ureA -CodY reg ureB -CodY reg ureC -GlnR reg ureA -GlnR reg ureB -GlnR reg ureC -PucR reg ureA -PucR reg ureB -PucR reg ureC -PucR reg pucL -PucR reg pucM -TnrA reg pucL -TnrA reg pucM -AbrB reg hutU -CcpA reg hutU -CodY reg hutU -HutP reg hutU -ArfM reg nasF -Fur reg nasF -GlnR reg nasF -NsrR reg nasF -ResD reg nasF -TnrA reg nasF -PerR reg hemD -PucR reg pucA -PucR reg pucB -PucR reg pucC -PucR reg pucD -PucR reg pucE -PurR reg xpt -CcpA reg xylA -CcpB reg xylA -XylR reg xylA -CcpA reg xylB -CcpB reg xylB -XylR reg xylB -CcpA reg acuA -CcpA reg acuB -CcpA reg acuC -AcoR reg acoA -AcoR reg acoB -CcpA reg acoA -CcpA reg acoB -AcoR reg acoL -CcpA reg acoL -AcoR reg acoC -CcpA reg acoC -TrnD-Cys reg cysE -AraR reg abfA -AraR reg xsa -CcpA reg abfA -AbrB reg argJ -AhrC reg argJ -BltR reg bltD -Mta reg bltD -GlpP reg glpQ -PhoP reg glpQ -ArfM reg nasD -ArfM reg nasE -Fur reg nasD -Fur reg nasE -GlnR reg nasD -GlnR reg nasE -NsrR reg nasD -NsrR reg nasE -ResD reg nasD -ResD reg nasE -TnrA reg nasD -TnrA reg nasE -CcpA reg pdp -DeoR reg pdp -PurR reg purH -PurR reg pyrD -PurR reg pyrK -PyrR reg pyrD -PyrR reg pyrK -SacT reg sacA -SacY reg sacA -YrzC reg yrhB -YsiA reg yusK -YvbA reg yusK -BkdR reg lpdV -CodY reg lpdV -TnrA reg lpdV -BkdR reg bkdAA -BkdR reg bkdAB -CodY reg bkdAA -CodY reg bkdAB -TnrA reg bkdAA -TnrA reg bkdAB -BkdR reg bkdB -CodY reg bkdB -TnrA reg bkdB -CcpA reg lcfA -YsiA reg lcfA -YsiA reg yhfL -CcpA reg fbaB -IolR reg fbaB -CcpA reg iolE -IolR reg iolE -CcpA reg iolC -IolR reg iolC -CcpA reg iolB -IolR reg iolB -CcpA reg iolD -IolR reg iolD -CcpA reg ysiB -YsiA reg ysiB -YsiA reg yusL -YvbA reg yusL -ArfM reg nasB -Fur reg nasB -GlnR reg nasB -NsrR reg nasB -ResD reg nasB -TnrA reg nasB -ArfM reg nasC -Fur reg nasC -GlnR reg nasC -NsrR reg nasC -ResD reg nasC -TnrA reg nasC -PurR reg purL -PurR reg purQ -PurR reg purS -TenI reg yjbV -YwfK reg yvgQ -YwfK reg yvgR -CcpA reg ydhR -GmuR reg ydhR -YcbA reg ybgJ -CcpA reg acoR -DegU reg ispA -Hpr reg ispA -Ipi reg ispA -AlsR reg alsS -ArfM reg alsS -CcpA reg alsS -YdiH reg alsS -CcpA reg ydhP -GmuR reg ydhP -PerR reg hemB -PerR reg hemC -BkdR reg bcd -CodY reg bcd -TnrA reg bcd -YqzB reg speD -YufM reg ywkA -CodY reg ilvA -Spo1A reg ycgN -CcpA reg yjmC -ExuR reg yjmC -CcpA reg kdgA -KdgR reg kdgA -TnrA reg yccC -PucR reg yurG -TnrA reg ywrD -IolR reg iolS -CcpA reg ydhS -GmuR reg ydhS -DegU reg sacX -SacT reg sacX -SacY reg sacX -CcpA reg malA -YfiA reg malA -CcpA reg treA -TreR reg treA -GlpP reg glpD -GutR reg gutB -YrzC reg yrhA -LrpA reg glyA -LrpB reg glyA -PurR reg glyA -PyrR reg pyrR -TnrA reg ywlF -BirA reg bioB -CodY reg ybgE -LacR reg lacA -CcpA reg idh -IolR reg idh -CcpA reg leuA -CodY reg leuA -TnrA reg leuA -TrnS-Leu2 reg leuA -AbrB reg citB -CcpC reg citB -CodY reg citB -TnrA reg citB -CcpA reg ydhT -GmuR reg ydhT -CcpA reg yxjF -RsfA reg fabL -SpoVT reg fabL -YfhP reg fabL -YlpC reg fabI -YjbD reg ytnL -YrzC reg ytnL -YtlI reg ytnL -CcpA reg xynB -XylR reg xynB -Fur reg dhbA -CcpA reg gntZ -CcpB reg gntZ -GntR reg gntZ -CcpA reg kdgK -KdgR reg kdgK -PhoP reg yfkN -YlpC reg fabD -BkdR reg buk -CodY reg buk -TnrA reg buk -CcpA reg gntK -CcpB reg gntK -GntR reg gntK -CcpA reg amyE -DegU reg amyE -TenI reg tenA -AbrB reg argD -AhrC reg argD -AbrB reg hutG -CcpA reg hutG -CodY reg hutG -HutP reg hutG -AbrB reg hutI -CcpA reg hutI -CodY reg hutI -HutP reg hutI -ComA reg pel -TnrA reg pel -MtrB reg aroE -Rho reg aroE -PucR reg yurH -CcpA reg yjmD -ExuR reg yjmD -AbrB reg argB -AhrC reg argB -YlpC reg fabG -AlsR reg alsD -ArfM reg alsD -CcpA reg alsD -YdiH reg alsD -YrxA reg nadC -AbrB reg argC -AhrC reg argC -MtrB reg folK -MtrB reg trpF -Rho reg trpF -DegU reg sacB -SacT reg sacB -SacY reg sacB -TenA reg sacB -BirA reg bioI -HxlR reg hxlA -HxlR reg hxlB -MtrB reg pabC -YrxA reg nifS +CcpA(TF) tfg leuC +CcpA(TF) tfg leuD +CodY(TF) tfg leuC +CodY(TF) tfg leuD +TnrA(TF) tfg leuC +TnrA(TF) tfg leuD +TrnS-Leu2(TF) tfg leuC +TrnS-Leu2(TF) tfg leuD +CcpA(TF) tfg leuB +CodY(TF) tfg leuB +TnrA(TF) tfg leuB +TrnS-Leu2(TF) tfg leuB +GabR(TF) tfg gabT +BirA(TF) tfg bioW +CcpA(TF) tfg licH +LicR(TF) tfg licH +BirA(TF) tfg bioF +CcpA(TF) tfg ackA +CcpA(TF) tfg ilvB +CcpA(TF) tfg ilvH +CodY(TF) tfg ilvB +CodY(TF) tfg ilvH +TnrA(TF) tfg ilvB +TnrA(TF) tfg ilvH +TrnS-Leu2(TF) tfg ilvB +TrnS-Leu2(TF) tfg ilvH +Spo0A(TF) tfg accA +Spo0A(TF) tfg accD +CcpA(TF) tfg mmgA +CcpA(TF) tfg acsA +CodY(TF) tfg acsA +CcpA(TF) tfg mmgC +YsiA(TF) tfg acdA +BirA(TF) tfg bioA +PurR(TF) tfg purB +PurR(TF) tfg purA +PhoP(TF) tfg phoA +PhoP(TF) tfg phoB +PhoP(TF) tfg phoB +TenA(TF) tfg phoA +PucR(TF) tfg pucH +CcpA(TF) tfg uxaA +ExuR(TF) tfg uxaA +MtrB(TF) tfg trpD +Rho(TF) tfg trpD +MtrB(TF) tfg trpE +Rho(TF) tfg trpE +MtrB(TF) tfg pabB +MtrB(TF) tfg pabA +AhrC(TF) tfg rocF +RocR(TF) tfg rocF +Spo0A(TF) tfg rocF +AbrB(TF) tfg asnH +SpoIIID(TF) tfg asnO +PurR(TF) tfg pyrB +PyrR(TF) tfg pyrB +CcpA(TF) tfg bglH +LicT(TF) tfg bglH +YlpC(TF) tfg fabF +YlpC(TF) tfg fabHA +YlpC(TF) tfg fabHB +AbrB(TF) tfg carA +AbrB(TF) tfg carB +AhrC(TF) tfg carA +AhrC(TF) tfg carB +PurR(TF) tfg pyrAA +PurR(TF) tfg pyrAB +PyrR(TF) tfg pyrAA +PyrR(TF) tfg pyrAB +CcpA(TF) tfg citZ +CcpA(TF) tfg mmgD +CcpC(TF) tfg citZ +CitR(TF) tfg citA +ArfM(TF) tfg hemN +ArfM(TF) tfg hemZ +Fnr(TF) tfg hemZ +HrcA(TF) tfg hemN +ResD(TF) tfg hemZ +YrzC(TF) tfg cysK +Spo0A(TF) tfg cdd +CcpA(TF) tfg dra +DeoR(TF) tfg dra +BirA(TF) tfg bioD +SpoVT(TF) tfg lysA +MtrB(TF) tfg folB +PurR(TF) tfg pyrC +PyrR(TF) tfg pyrC +MtrB(TF) tfg sul +CodY(TF) tfg ilvD +CcpA(TF) tfg uxuA +ExuR(TF) tfg uxuA +CggR(TF) tfg eno +FruR(TF) tfg fruK +Spo0A(TF) tfg fruK +CcpA(TF) tfg galK +CcpA(TF) tfg galT +GltC(TF) tfg gltA +GltC(TF) tfg gltB +GltR(TF) tfg gltA +GltR(TF) tfg gltB +TnrA(TF) tfg gltA +TnrA(TF) tfg gltB +CggR(TF) tfg gapA +YqzB(TF) tfg gapB +CcpA(TF) tfg eutD +SpoVT(TF) tfg gdh +CcpA(TF) tfg uxaC +ExuR(TF) tfg uxaC +RocR(TF) tfg rocG +Spo0A(TF) tfg rocG +PerR(TF) tfg hemL +PurR(TF) tfg purF +GlnR(TF) tfg glnA +TnrA(TF) tfg glnA +PerR(TF) tfg hemA +CcpA(TF) tfg glpK +GlpP(TF) tfg glpK +TenI(TF) tfg goxB +PurR(TF) tfg guaC +PucR(TF) tfg guaD +AbrB(TF) tfg hutH +CcpA(TF) tfg hutH +CodY(TF) tfg hutH +HutP(TF) tfg hutH +MtrB(TF) tfg trpC +Rho(TF) tfg trpC +Fur(TF) tfg dhbB +Fur(TF) tfg dhbC +CcpA(TF) tfg icd +CcpC(TF) tfg icd +CcpA(TF) tfg ilvC +CodY(TF) tfg ilvC +TnrA(TF) tfg ilvC +TrnS-Leu2(TF) tfg ilvC +AraR(TF) tfg araA +CcpA(TF) tfg araA +AnsR(TF) tfg ansA +AnsR(TF) tfg ansB +YrxA(TF) tfg nadB +AraR(TF) tfg araB +CcpA(TF) tfg araB +AraR(TF) tfg araD +CcpA(TF) tfg araD +CcpA(TF) tfg mdh +CcpC(TF) tfg mdh +PurR(TF) tfg folD +CcpA(TF) tfg mmsA +IolR(TF) tfg mmsA +YrzC(TF) tfg mtn +AhrC(TF) tfg rocD +RocR(TF) tfg rocD +Spo0A(TF) tfg rocD +AbrB(TF) tfg argF +AhrC(TF) tfg argF +PurR(TF) tfg pyrE +PyrR(TF) tfg pyrE +PurR(TF) tfg pyrF +PyrR(TF) tfg pyrF +BkdR(TF) tfg ptb +CodY(TF) tfg ptb +TnrA(TF) tfg ptb +YqzB(TF) tfg pckA +CggR(TF) tfg pgk +CggR(TF) tfg pgm +PurR(TF) tfg purE +PurR(TF) tfg purK +PurR(TF) tfg purC +PurR(TF) tfg purD +PurR(TF) tfg purN +PurR(TF) tfg purM +MtrB(TF) tfg tyrA +Rho(TF) tfg tyrA +AhrC(TF) tfg rocA +RocR(TF) tfg rocA +YofA(TF) tfg pycA +AbrB(TF) tfg rbsK +CcpA(TF) tfg rbsK +ResD(TF) tfg nrdE +ResD(TF) tfg nrdF +ResD(TF) tfg ymaA +GabR(TF) tfg gabD +CcpA(TF) tfg scoA +CcpA(TF) tfg scoB +CcpA(TF) tfg uxaB +ExuR(TF) tfg uxaB +Spo0A(TF) tfg tkt +CggR(TF) tfg tpiA +MtrB(TF) tfg trpA +MtrB(TF) tfg trpB +Rho(TF) tfg trpA +Rho(TF) tfg trpB +MtrB(TF) tfg hisC +Rho(TF) tfg hisC +CodY(TF) tfg ureA +CodY(TF) tfg ureB +CodY(TF) tfg ureC +GlnR(TF) tfg ureA +GlnR(TF) tfg ureB +GlnR(TF) tfg ureC +PucR(TF) tfg ureA +PucR(TF) tfg ureB +PucR(TF) tfg ureC +PucR(TF) tfg pucL +PucR(TF) tfg pucM +TnrA(TF) tfg pucL +TnrA(TF) tfg pucM +AbrB(TF) tfg hutU +CcpA(TF) tfg hutU +CodY(TF) tfg hutU +HutP(TF) tfg hutU +ArfM(TF) tfg nasF +Fur(TF) tfg nasF +GlnR(TF) tfg nasF +NsrR(TF) tfg nasF +ResD(TF) tfg nasF +TnrA(TF) tfg nasF +PerR(TF) tfg hemD +PucR(TF) tfg pucA +PucR(TF) tfg pucB +PucR(TF) tfg pucC +PucR(TF) tfg pucD +PucR(TF) tfg pucE +PurR(TF) tfg xpt +CcpA(TF) tfg xylA +CcpB(TF) tfg xylA +XylR(TF) tfg xylA +CcpA(TF) tfg xylB +CcpB(TF) tfg xylB +XylR(TF) tfg xylB +CcpA(TF) tfg acuA +CcpA(TF) tfg acuB +CcpA(TF) tfg acuC +AcoR(TF) tfg acoA +AcoR(TF) tfg acoB +CcpA(TF) tfg acoA +CcpA(TF) tfg acoB +AcoR(TF) tfg acoL +CcpA(TF) tfg acoL +AcoR(TF) tfg acoC +CcpA(TF) tfg acoC +TrnD-Cys(TF) tfg cysE +AraR(TF) tfg abfA +AraR(TF) tfg xsa +CcpA(TF) tfg abfA +AbrB(TF) tfg argJ +AhrC(TF) tfg argJ +BltR(TF) tfg bltD +Mta(TF) tfg bltD +GlpP(TF) tfg glpQ +PhoP(TF) tfg glpQ +ArfM(TF) tfg nasD +ArfM(TF) tfg nasE +Fur(TF) tfg nasD +Fur(TF) tfg nasE +GlnR(TF) tfg nasD +GlnR(TF) tfg nasE +NsrR(TF) tfg nasD +NsrR(TF) tfg nasE +ResD(TF) tfg nasD +ResD(TF) tfg nasE +TnrA(TF) tfg nasD +TnrA(TF) tfg nasE +CcpA(TF) tfg pdp +DeoR(TF) tfg pdp +PurR(TF) tfg purH +PurR(TF) tfg pyrD +PurR(TF) tfg pyrK +PyrR(TF) tfg pyrD +PyrR(TF) tfg pyrK +SacT(TF) tfg sacA +SacY(TF) tfg sacA +YrzC(TF) tfg yrhB +YsiA(TF) tfg yusK +YvbA(TF) tfg yusK +BkdR(TF) tfg lpdV +CodY(TF) tfg lpdV +TnrA(TF) tfg lpdV +BkdR(TF) tfg bkdAA +BkdR(TF) tfg bkdAB +CodY(TF) tfg bkdAA +CodY(TF) tfg bkdAB +TnrA(TF) tfg bkdAA +TnrA(TF) tfg bkdAB +BkdR(TF) tfg bkdB +CodY(TF) tfg bkdB +TnrA(TF) tfg bkdB +CcpA(TF) tfg lcfA +YsiA(TF) tfg lcfA +YsiA(TF) tfg yhfL +CcpA(TF) tfg fbaB +IolR(TF) tfg fbaB +CcpA(TF) tfg iolE +IolR(TF) tfg iolE +CcpA(TF) tfg iolC +IolR(TF) tfg iolC +CcpA(TF) tfg iolB +IolR(TF) tfg iolB +CcpA(TF) tfg iolD +IolR(TF) tfg iolD +CcpA(TF) tfg ysiB +YsiA(TF) tfg ysiB +YsiA(TF) tfg yusL +YvbA(TF) tfg yusL +ArfM(TF) tfg nasB +Fur(TF) tfg nasB +GlnR(TF) tfg nasB +NsrR(TF) tfg nasB +ResD(TF) tfg nasB +TnrA(TF) tfg nasB +ArfM(TF) tfg nasC +Fur(TF) tfg nasC +GlnR(TF) tfg nasC +NsrR(TF) tfg nasC +ResD(TF) tfg nasC +TnrA(TF) tfg nasC +PurR(TF) tfg purL +PurR(TF) tfg purQ +PurR(TF) tfg purS +TenI(TF) tfg yjbV +YwfK(TF) tfg yvgQ +YwfK(TF) tfg yvgR +CcpA(TF) tfg ydhR +GmuR(TF) tfg ydhR +YcbA(TF) tfg ybgJ +CcpA(TF) tfg acoR +DegU(TF) tfg ispA +Hpr(TF) tfg ispA +Ipi(TF) tfg ispA +AlsR(TF) tfg alsS +ArfM(TF) tfg alsS +CcpA(TF) tfg alsS +YdiH(TF) tfg alsS +CcpA(TF) tfg ydhP +GmuR(TF) tfg ydhP +PerR(TF) tfg hemB +PerR(TF) tfg hemC +BkdR(TF) tfg bcd +CodY(TF) tfg bcd +TnrA(TF) tfg bcd +YqzB(TF) tfg speD +YufM(TF) tfg ywkA +CodY(TF) tfg ilvA +Spo1A(TF) tfg ycgN +CcpA(TF) tfg yjmC +ExuR(TF) tfg yjmC +CcpA(TF) tfg kdgA +KdgR(TF) tfg kdgA +TnrA(TF) tfg yccC +PucR(TF) tfg yurG +TnrA(TF) tfg ywrD +IolR(TF) tfg iolS +CcpA(TF) tfg ydhS +GmuR(TF) tfg ydhS +DegU(TF) tfg sacX +SacT(TF) tfg sacX +SacY(TF) tfg sacX +CcpA(TF) tfg malA +YfiA(TF) tfg malA +CcpA(TF) tfg treA +TreR(TF) tfg treA +GlpP(TF) tfg glpD +GutR(TF) tfg gutB +YrzC(TF) tfg yrhA +LrpA(TF) tfg glyA +LrpB(TF) tfg glyA +PurR(TF) tfg glyA +PyrR(TF) tfg pyrR +TnrA(TF) tfg ywlF +BirA(TF) tfg bioB +CodY(TF) tfg ybgE +LacR(TF) tfg lacA +CcpA(TF) tfg idh +IolR(TF) tfg idh +CcpA(TF) tfg leuA +CodY(TF) tfg leuA +TnrA(TF) tfg leuA +TrnS-Leu2(TF) tfg leuA +AbrB(TF) tfg citB +CcpC(TF) tfg citB +CodY(TF) tfg citB +TnrA(TF) tfg citB +CcpA(TF) tfg ydhT +GmuR(TF) tfg ydhT +CcpA(TF) tfg yxjF +RsfA(TF) tfg fabL +SpoVT(TF) tfg fabL +YfhP(TF) tfg fabL +YlpC(TF) tfg fabI +YjbD(TF) tfg ytnL +YrzC(TF) tfg ytnL +YtlI(TF) tfg ytnL +CcpA(TF) tfg xynB +XylR(TF) tfg xynB +Fur(TF) tfg dhbA +CcpA(TF) tfg gntZ +CcpB(TF) tfg gntZ +GntR(TF) tfg gntZ +CcpA(TF) tfg kdgK +KdgR(TF) tfg kdgK +PhoP(TF) tfg yfkN +YlpC(TF) tfg fabD +BkdR(TF) tfg buk +CodY(TF) tfg buk +TnrA(TF) tfg buk +CcpA(TF) tfg gntK +CcpB(TF) tfg gntK +GntR(TF) tfg gntK +CcpA(TF) tfg amyE +DegU(TF) tfg amyE +TenI(TF) tfg tenA +AbrB(TF) tfg argD +AhrC(TF) tfg argD +AbrB(TF) tfg hutG +CcpA(TF) tfg hutG +CodY(TF) tfg hutG +HutP(TF) tfg hutG +AbrB(TF) tfg hutI +CcpA(TF) tfg hutI +CodY(TF) tfg hutI +HutP(TF) tfg hutI +ComA(TF) tfg pel +TnrA(TF) tfg pel +MtrB(TF) tfg aroE +Rho(TF) tfg aroE +PucR(TF) tfg yurH +CcpA(TF) tfg yjmD +ExuR(TF) tfg yjmD +AbrB(TF) tfg argB +AhrC(TF) tfg argB +YlpC(TF) tfg fabG +AlsR(TF) tfg alsD +ArfM(TF) tfg alsD +CcpA(TF) tfg alsD +YdiH(TF) tfg alsD +YrxA(TF) tfg nadC +AbrB(TF) tfg argC +AhrC(TF) tfg argC +MtrB(TF) tfg folK +MtrB(TF) tfg trpF +Rho(TF) tfg trpF +DegU(TF) tfg sacB +SacT(TF) tfg sacB +SacY(TF) tfg sacB +TenA(TF) tfg sacB +BirA(TF) tfg bioI +HxlR(TF) tfg hxlA +HxlR(TF) tfg hxlB +MtrB(TF) tfg pabC +YrxA(TF) tfg nifS --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups 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To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en -~----------~----~----~----~------~----~------~--~---
