Author: kono
Date: 2010-01-19 10:45:20 -0800 (Tue, 19 Jan 2010)
New Revision: 18954
Modified:
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/VisualStyleBuilder.java
Log:
Node attributes will be added when visualize pair of networks. This will be
used for generating Visual Style.
Modified:
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
2010-01-19 18:40:37 UTC (rev 18953)
+++
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
2010-01-19 18:45:20 UTC (rev 18954)
@@ -110,7 +110,7 @@
final double[] yMax = new double[3];
findExtents(networkView, leftSet, rightSet, xMin, xMax, yMin,
yMax);
- final VisualStyle style =
VisualStyleBuilder.getVisualStyle(visualStyleName);
+ final VisualStyle style =
VisualStyleBuilder.getVisualStyle(visualStyleName, network1.getTitle(),
network2.getTitle());
networkView.setVisualStyle(style.getName());
Cytoscape.getVisualMappingManager().setVisualStyle(style);
networkView.redrawGraph(false, true);
@@ -126,23 +126,28 @@
final Set<CyNode> rightSet)
{
@SuppressWarnings("unchecked")
- final Set<CyNode> orig1 = new
HashSet<CyNode>((List<CyNode>)network1);
+ final Set<CyNode> orig1 = new
HashSet<CyNode>(network1.nodesList());
@SuppressWarnings("unchecked")
- final Set<CyNode> orig2 = new
HashSet<CyNode>((List<CyNode>)network2);
+ final Set<CyNode> orig2 = new
HashSet<CyNode>(network2.nodesList());
@SuppressWarnings("unchecked")
final List<CyNode> resultNodes =
(List<CyNode>)result.nodesList();
+
+ final CyAttributes nodeAttr = Cytoscape.getNodeAttributes();
+
for (final CyNode node : resultNodes) {
final boolean inNetwork1 = orig1.contains(node);
final boolean inNetwork2 = orig2.contains(node);
if (inNetwork1 && inNetwork2)
/* Do Nothing. */;
- else if (inNetwork1 && !inNetwork2)
+ else if (inNetwork1 && !inNetwork2) {
leftSet.add(node);
- else if (!inNetwork1 && inNetwork2)
+ nodeAttr.setAttribute(node.getIdentifier(),
visualStyleName, network1.getTitle());
+ } else if (!inNetwork1 && inNetwork2) {
rightSet.add(node);
- else // This should never happen!
+ nodeAttr.setAttribute(node.getIdentifier(),
visualStyleName, network1.getTitle());
+ } else // This should never happen!
throw new IllegalStateException("Do not know
how to categorise a node!");
}
}
Modified:
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/VisualStyleBuilder.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/VisualStyleBuilder.java
2010-01-19 18:40:37 UTC (rev 18953)
+++
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/VisualStyleBuilder.java
2010-01-19 18:45:20 UTC (rev 18954)
@@ -27,15 +27,15 @@
// This is a Singleton.
private static VisualStyleBuilder builder = new VisualStyleBuilder();
- public static VisualStyle getVisualStyle(final String vsName) {
- return builder.getStyle(vsName);
+ public static VisualStyle getVisualStyle(final String vsName, final
String network1, final String network2) {
+ return builder.getStyle(vsName, network1, network2);
}
private VisualStyleBuilder() {
}
- public VisualStyle getStyle(final String vsName) {
- final VisualStyle newStyle = buildStyle(vsName);
+ public VisualStyle getStyle(final String vsName, final String network1,
final String network2) {
+ final VisualStyle newStyle = buildStyle(vsName, network1,
network2);
Cytoscape.getVisualMappingManager().getCalculatorCatalog()
.addVisualStyle(newStyle);
return newStyle;
@@ -46,9 +46,12 @@
*
* @return default visual style.
*/
- private VisualStyle buildStyle(final String vsName) {
+ private VisualStyle buildStyle(final String vsName, final String
network1, final String network2) {
final Color NODE_COLOR = new Color(25, 25, 200);
- final Color NODE_BORDER_COLOR = new Color(25, 25, 25);
+
+ final Color NODE_BORDER_COLOR_1 = new Color(25, 25, 25);
+ final Color NODE_BORDER_COLOR_2 = new Color(0, 50, 185);
+
final Color NODE_LABEL_COLOR = new Color(10, 10, 10);
final Color EDGE_COLOR = new Color(10, 10, 10);
@@ -89,11 +92,27 @@
nac.getDefaultAppearance().set(VisualPropertyType.NODE_LINE_WIDTH, 4);
nac.getDefaultAppearance().set(VisualPropertyType.NODE_BORDER_COLOR,
- NODE_BORDER_COLOR);
+ NODE_BORDER_COLOR_1);
nac.getDefaultAppearance().set(VisualPropertyType.NODE_SIZE,
65);
nac.getDefaultAppearance().set(VisualPropertyType.NODE_LABEL_COLOR,
NODE_LABEL_COLOR);
+
+ // Node Mapping
+ // 1. Node border color
+ final DiscreteMapping nodeBorderColor = new
DiscreteMapping(Color.black,
+ vsName, ObjectMapping.NODE_MAPPING);
+ nodeBorderColor.setControllingAttributeName(vsName, null,
false);
+ nodeBorderColor.putMapValue(network1, NODE_BORDER_COLOR_1);
+ nodeBorderColor.putMapValue(network2, NODE_BORDER_COLOR_2);
+
+ Calculator nodeBorderColorCalc = new BasicCalculator(vsName +
"-"
+ + "NodeBorderColorMapping", nodeBorderColor,
+ VisualPropertyType.NODE_BORDER_COLOR);
+
+ nac.setCalculator(nodeBorderColorCalc);
+
+
eac.setCalculator(calce);
eac.getDefaultAppearance().set(VisualPropertyType.EDGE_COLOR,
EDGE_COLOR);
@@ -133,7 +152,6 @@
eac.setCalculator(edgeColorCalc);
- // Edge continuous mappings
return defStyle;
}
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