Author: ruschein
Date: 2010-01-19 11:03:28 -0800 (Tue, 19 Jan 2010)
New Revision: 18957
Modified:
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
Log:
Completed first approximation of layout.
Modified:
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
2010-01-19 18:49:40 UTC (rev 18956)
+++
csplugins/trunk/ucsd/ruschein/BipartiteVisualiser/src/org/cytoscape/BipartiteVisualiserPlugin/duallayout/LayoutEngine.java
2010-01-19 19:03:28 UTC (rev 18957)
@@ -5,6 +5,7 @@
import giny.view.NodeView;
import java.util.HashSet;
+import java.util.Iterator;
import java.util.List;
import java.util.Set;
@@ -16,8 +17,9 @@
import cytoscape.layout.CyLayouts;
import cytoscape.task.TaskMonitor;
import cytoscape.view.CyNetworkView;
-import cytoscape.visual.VisualStyle;
+import cytoscape.view.CyNodeView;
+
public class LayoutEngine {
static String MM_EDGE_ATTR_PREFIX = "MM-";
@@ -34,16 +36,18 @@
private static final int RIGHT = 1;
private static final int CENTRE = 2;
+
public LayoutEngine(final EdgeView edgeView, final CyNetwork
parentNetwork,
- final CyNetwork network1, final CyNetwork network2) {
-
+ final CyNetwork network1, final CyNetwork network2)
+ {
this.edgeView = edgeView;
this.parentNetwork = parentNetwork;
this.network1 = network1;
this.network2 = network2;
}
- public void doLayout(TaskMonitor taskMonitor) {
+
+ public void doLayout(final TaskMonitor taskMonitor) {
if (taskMonitor != null)
taskMonitor.setPercentCompleted(0);
@@ -73,8 +77,8 @@
final Set<CyEdge> edgesInResult = new HashSet<CyEdge>(
(List<CyEdge>) result.edgesList());
final CyAttributes edgeAttr = Cytoscape.getEdgeAttributes();
-
- for (CyNode node : nodesInResult) {
+
+ for (final CyNode node: nodesInResult) {
// Get the list of edges connected to this node
int[] edgeIndices =
parentNetwork.getAdjacentEdgeIndicesArray(node
.getRootGraphIndex(), true, true, true);
@@ -109,11 +113,43 @@
final double[] yMin = new double[3];
final double[] yMax = new double[3];
findExtents(networkView, leftSet, rightSet, xMin, xMax, yMin,
yMax);
-
- final VisualStyle style =
VisualStyleBuilder.getVisualStyle(visualStyleName, network1.getTitle(),
network2.getTitle());
- networkView.setVisualStyle(style.getName());
- Cytoscape.getVisualMappingManager().setVisualStyle(style);
- networkView.redrawGraph(false, true);
+
+ // Calculate left/right shifts...
+ double maxWidth = Math.max(xMax[LEFT] - xMin[LEFT], xMax[RIGHT]
- xMin[RIGHT]);
+ final boolean centreIsEmpty = xMin[CENTRE] ==
Double.POSITIVE_INFINITY;
+ if (!centreIsEmpty)
+ maxWidth = Math.max(maxWidth, xMax[CENTRE] -
xMin[CENTRE]);
+ final double baseShift = (maxWidth == 0) ? 100 : maxWidth / 3.0;
+ double leftShift, rightShift;
+ if (centreIsEmpty) {
+ double delta = xMin[RIGHT] - xMax[LEFT];
+ double totalShift = -delta + baseShift;
+ leftShift = - (totalShift / 2.0);
+ rightShift = + (totalShift / 2.0);
+ } else { // We have at least one "shared" node in the centre.
+ double delta = xMin[CENTRE] - xMax[LEFT];
+ double totalShift = -delta + baseShift;
+ leftShift = -totalShift;
+
+ delta = xMin[RIGHT] - xMax[CENTRE];
+ totalShift = -delta + baseShift;
+ rightShift = +totalShift;
+ }
+
+ // ...and now apply them.
+ for (final CyNode node : leftSet) {
+ final CyNodeView view =
(CyNodeView)networkView.getNodeView(node);
+ view.setXPosition(view.getXPosition() + leftShift);
+ }
+ for (final CyNode node : rightSet) {
+ final CyNodeView view =
(CyNodeView)networkView.getNodeView(node);
+ view.setXPosition(view.getXPosition() + rightShift);
+ }
+
+ // Make sure all the nodes have their position updated.
+ Iterator nodeViewsIterator = networkView.getNodeViewsIterator();
+ while (nodeViewsIterator.hasNext())
+
((NodeView)nodeViewsIterator.next()).setNodePosition(true);
}
/**
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