Author: scooter
Date: 2010-01-29 22:08:39 -0800 (Fri, 29 Jan 2010)
New Revision: 19081

Removed:
   cytoscape/trunk/src/cytoscape/command/HelpCommand.java
Modified:
   cytoscape/trunk/src/cytoscape/command/AbstractCommandHandler.java
   cytoscape/trunk/src/cytoscape/command/CyCommandManager.java
Log:
Removed help


Modified: cytoscape/trunk/src/cytoscape/command/AbstractCommandHandler.java
===================================================================
--- cytoscape/trunk/src/cytoscape/command/AbstractCommandHandler.java   
2010-01-30 06:06:32 UTC (rev 19080)
+++ cytoscape/trunk/src/cytoscape/command/AbstractCommandHandler.java   
2010-01-30 06:08:39 UTC (rev 19081)
@@ -193,7 +193,7 @@
         */
        public String getDescription(String command) { 
                if (descriptionMap.containsKey(command)) {
-                       return formatDescription(command, 
descriptionMap.get(command), argumentMap.get(command));
+                       return descriptionMap.get(command);
                }
                return null;
        }
@@ -357,63 +357,6 @@
        }
 
        /**
-        * This method can be used to create a formatted description that 
includes
-        * the namespace, command, and options.
-        *
-        * @param command the command 
-        * @param description the textual description
-        * @return the formatted text
-        */
-       protected String formatDescription(String command, String description) {
-               if (!argumentMap.containsKey(command)) {
-                       List<Tunable> args = argumentMap.get(command);
-                       return formatDescription(command, description, args);
-               }
-               return formatDescription(command, description, new ArrayList());
-       }
-
-       /**
-        * This method can be used to create a formatted description that 
includes
-        * the namespace, command, and options.
-        *
-        * @param command the command 
-        * @param description the textual description
-        * @param args the list of arguments for this command
-        * @return the formatted text
-        */
-       protected String formatDescription(String command, String description, 
Collection<Tunable>args) {
-               String descr = namespace.getNamespaceName()+" "+command+": 
"+description;
-               if (args == null || args.size() == 0) return descr;
-               descr += "\n  Arguments:\n";
-               for (Tunable arg: args) {
-                 descr += "    [";
-                       if (arg.getName() != null)
-                               descr += arg.getName();
-                       if (arg.getDescription() != null && 
!arg.getDescription().equals(arg.getName()))
-                               descr += "("+arg.getDescription()+")";
-                       if (arg.getValue() != null)
-                               descr += "="+arg.getValue();
-                       else
-                               descr += "=value";
-                 descr += "]\n";
-               }
-               return descr;
-       }
-
-       /**
-        * This method can be used to create a formatted description that 
includes
-        * the namespace, command, and options.
-        *
-        * @param command the command 
-        * @param description the textual description
-        * @param args the list of arguments for this command
-        * @return the formatted text
-        */
-       protected String formatDescription(String command, String description, 
Map<String, Object>args) {
-               return formatDescription(command, description, 
createTunableCollection(args));
-       }
-
-       /**
         * This method is useful for converting from Tunable lists to key-value 
settings
         */
        private Map<String, Object> createKVSettings(String command) {
@@ -421,7 +364,7 @@
                return createKVMap(argumentMap.get(command));
        }
 
-       private Tunable makeTunable(String name, Object value) {
+       static public Tunable makeTunable(String name, Object value) {
                Class vClass = value.getClass();
                if (vClass == Double.class || vClass == Float.class) {
                        return new Tunable(name, name, Tunable.DOUBLE, value);

Modified: cytoscape/trunk/src/cytoscape/command/CyCommandManager.java
===================================================================
--- cytoscape/trunk/src/cytoscape/command/CyCommandManager.java 2010-01-30 
06:06:32 UTC (rev 19080)
+++ cytoscape/trunk/src/cytoscape/command/CyCommandManager.java 2010-01-30 
06:08:39 UTC (rev 19081)
@@ -58,18 +58,10 @@
 public class CyCommandManager {
        private static Map<CyCommandNamespace, Map<String,CyCommandHandler>> 
comMap;
        private static Map<String, CyCommandNamespace> nsMap;
-       private static CyCommandHandler helpHandler = null;
-       private static CyCommandNamespace helpNS = null;
 
   static {
     comMap = new HashMap<CyCommandNamespace, Map<String,CyCommandHandler>>();
                nsMap = new HashMap<String, CyCommandNamespace>();
-
-    // special case for help
-    helpNS = reserveNamespace(HelpCommand.HELP);
-               helpHandler = new HelpCommand();
-               // Register the empty help string
-               register(helpNS, "", helpHandler);
        }
 
        public static CyCommandNamespace reserveNamespace(String namespace) 
throws RuntimeException {
@@ -83,8 +75,6 @@
                nsMap.put(namespace, ns);
                comMap.put(ns, new HashMap());
 
-               // Add this namespace to help
-               register(helpNS, namespace, helpHandler);
                return ns;
        }
 

Deleted: cytoscape/trunk/src/cytoscape/command/HelpCommand.java
===================================================================
--- cytoscape/trunk/src/cytoscape/command/HelpCommand.java      2010-01-30 
06:06:32 UTC (rev 19080)
+++ cytoscape/trunk/src/cytoscape/command/HelpCommand.java      2010-01-30 
06:08:39 UTC (rev 19081)
@@ -1,105 +0,0 @@
-/* vim: set ts=2: */
-/**
- * Copyright (c) 2009 The Regents of the University of California.
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- *   1. Redistributions of source code must retain the above copyright
- *      notice, this list of conditions, and the following disclaimer.
- *   2. Redistributions in binary form must reproduce the above
- *      copyright notice, this list of conditions, and the following
- *      disclaimer in the documentation and/or other materials provided
- *      with the distribution.
- *   3. Redistributions must acknowledge that this software was
- *      originally developed by the UCSF Computer Graphics Laboratory
- *      under support by the NIH National Center for Research Resources,
- *      grant P41-RR01081.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY
- * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS BE LIABLE
- * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
- * OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
- * BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
- * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
- * OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
- * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- *
- */
-package cytoscape.command;
-
-import cytoscape.Cytoscape;
-import cytoscape.command.CyCommandException;
-import cytoscape.command.CyCommandHandler;
-import cytoscape.command.CyCommandManager;
-import cytoscape.command.CyCommandResult;
-import cytoscape.layout.Tunable;
-import cytoscape.logger.CyLogger;
-import cytoscape.view.CyNetworkView;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-/**
- * This Command provides an interface to list commands, subcommands and
- * their settings
- */
-class HelpCommand implements CyCommandHandler {
-  public final static String HELP = "help";
-
-       public CyCommandResult execute(String command, Map<String, Object>args) 
throws CyCommandException { 
-               CyCommandResult result = new CyCommandResult();
-
-               if (command == null || command.length() == 0) {
-                       result.addMessage("Available commands: ");
-                       for ( String ns : CyCommandManager.getNamespaceList() )
-                               result.addMessage("  "+ns);
-                       
-                       result.addMessage("For detailed information type: ");
-                       result.addMessage(" help command");
-               } else {
-                       // See if we have a command arg...
-                       if (args != null && args.size() > 0) {
-                               // We do, get the command we want details on
-                               for (String subc: args.keySet()) {
-                                       CyCommandHandler ch = 
CyCommandManager.getCommand(command, subc);
-                                       String desc = ch.getDescription(subc);
-                                       if (desc == null)
-                                               result.addMessage("Detailed 
information on '" + command + " " + subc+"' is not available  ");
-                                       else
-                                               result.addMessage(desc);
-                                       break;
-                               }
-                       } else {
-                               result.addMessage("Available " + command + " 
commands: ");
-                               for ( String c : 
CyCommandManager.getCommandList(command) )
-                                       result.addMessage("  "+ command + " " + 
c);
-                       }
-               }
-
-               return result;
-       }
-
-       public CyCommandResult execute(String command, Collection<Tunable> 
arguments) throws CyCommandException {
-               return execute( command, new HashMap<String,Object>() );
-       }
-
-       public List<String> getCommands() {
-               return CyCommandManager.getNamespaceList();
-       }
-
-       public List<String> getArguments(String command) { return new 
ArrayList<String>(); }
-       public Map<String, Object> getSettings(String command) { return new 
HashMap<String,Object>(); }
-       public Map<String, Tunable> getTunables(String command) { return new 
HashMap<String,Tunable>(); }
-
-       public String getDescription(String command) {
-               return "The 'help' command returns information about available 
commands.  For detailed information, type: 'help command'";
-       }
-}

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