Author: rodche
Date: 2010-02-02 10:30:01 -0800 (Tue, 02 Feb 2010)
New Revision: 19123
Modified:
coreplugins/trunk/cPath2/build.xml
coreplugins/trunk/cPath2/lib/biopax.jar
Log:
PathwayCommons plugin: build script and one lib changed
Modified: coreplugins/trunk/cPath2/build.xml
===================================================================
--- coreplugins/trunk/cPath2/build.xml 2010-02-02 18:23:30 UTC (rev 19122)
+++ coreplugins/trunk/cPath2/build.xml 2010-02-02 18:30:01 UTC (rev 19123)
@@ -14,7 +14,7 @@
<!-- The Cytoscape jar directory -->
<property name="cytoscape_jar_dir" value="../../cytoscape"/>
<!-- The Cytoscape plugin directory (core) -->
- <property name="cytoscape_plugin_dir" value="../../cytoscape/plugins"/>
+ <property name="cytoscape_plugin_dir"
value="../../cytoscape/plugins/core"/>
<!-- The directory containing the configuration files -->
<property name="config.dir" value="config"/>
<!-- Temporary build directories -->
@@ -24,8 +24,6 @@
<property name="jars.dir" value="${build.dir}/jars"/>
<!-- Jar file -->
<property name="project_jar" value="${project_name}.jar"/>
- <!-- PlugIns directory -->
- <property name="plugins.dir" value="plugins"/>
<!-- Styles Directory -->
<property name="style.dir" value="style"/>
<!-- Release directories -->
@@ -95,7 +93,6 @@
<target description="Removes all generated files." name="clean">
<delete dir="${build.dir}"/>
<delete dir="${jars.dir}"/>
- <delete dir="${plugins.dir}"/>
<delete dir="${junit.dir}"/>
<delete dir="${temp.dir}"/>
<delete>
@@ -130,14 +127,14 @@
<!-- Target to Run Cytoscape with CPath2 Plugin -->
<target depends="jar" description="Runs Cytoscape with cPath2 Plugin."
name="run">
- <copy todir="${plugins.dir}">
+ <copy todir="${cytoscape_plugin_dir}">
<fileset dir="${jars.dir}">
<include name="${project_jar}"/>
</fileset>
</copy>
<java classname="cytoscape.CyMain" classpathref="classpath"
fork="true" maxmemory="1000M">
- <arg line="-p plugins/cpath2.jar"/>
+ <arg line="-p ${cytoscape_plugin_dir}/cpath2.jar"/>
<arg line="-p ${cytoscape_plugin_dir}/biopax.jar"/>
<arg line="-p ${cytoscape_plugin_dir}/yLayouts.jar"/>
<arg line="-p ${cytoscape_plugin_dir}/quick_find.jar"/>
Modified: coreplugins/trunk/cPath2/lib/biopax.jar
===================================================================
(Binary files differ)
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