Author: Christian Lopes
Date: 2010-02-04 14:53:45 -0800 (Thu, 04 Feb 2010)
New Revision: 19194

Added:
   cytoscapeweb/trunk/website/src/img/icons/png.png
Removed:
   cytoscapeweb/trunk/website/src/img/layout/cytoscape_lite_logo.png
   cytoscapeweb/trunk/website/src/img/layout/footer.png
   cytoscapeweb/trunk/website/src/img/layout/footer_left.png
   cytoscapeweb/trunk/website/src/img/layout/footer_right.png
Modified:
   cytoscapeweb/trunk/website/default.properties
   cytoscapeweb/trunk/website/src/css/content.css
   cytoscapeweb/trunk/website/src/css/content/demo.css
   cytoscapeweb/trunk/website/src/css/content/download.css
   cytoscapeweb/trunk/website/src/css/content/home.css
   cytoscapeweb/trunk/website/src/css/layout.css
   cytoscapeweb/trunk/website/src/file/example_code/getting_started.html
   cytoscapeweb/trunk/website/src/file/example_code/interacting.html
   cytoscapeweb/trunk/website/src/file/example_code/style.html
   cytoscapeweb/trunk/website/src/img/layout/cytoscape_web_logo.png
   cytoscapeweb/trunk/website/src/js/content/demo.js
   cytoscapeweb/trunk/website/src/js/content/download.js
   cytoscapeweb/trunk/website/src/js/layout/layout.js
   cytoscapeweb/trunk/website/src/php/content/home.declaration.php
   cytoscapeweb/trunk/website/src/php/content/home.php
   cytoscapeweb/trunk/website/src/php/layout/footer.php
   cytoscapeweb/trunk/website/src/php/layout/header.php
Log:
New logo and footer.
Layout and CSS fixes.

Modified: cytoscapeweb/trunk/website/default.properties
===================================================================
--- cytoscapeweb/trunk/website/default.properties       2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/default.properties       2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,7 +1,7 @@
 # Website version
 build.version=0.1.2
 # The released Cytoscape Web version (downloadable zip & API doc)
-cw.build.version=0.3
+cw.build.version=0.3.1
 
 CYTOSCAPEWEB_HOME=../cytoscapeweb
 CW_FILE_HOME=../file
\ No newline at end of file

Modified: cytoscapeweb/trunk/website/src/css/content/demo.css
===================================================================
--- cytoscapeweb/trunk/website/src/css/content/demo.css 2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/css/content/demo.css 2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,7 +1,7 @@
 /* overall style */
 body.demo { left: 0; width: 100%; margin: 0; }
 #header-resizer { height: 0; width: 0; }
-body.demo #logo { margin-left: 1em; margin-right: 1em; }
+body.demo #logo { margin-left: 1em; margin-right: 5em; }
 body.demo #header .text { margin-top: 2.5em; color: #707070; }
 body.demo #page, body.demo #copyright, body.demo #navigation_links, body.demo 
#search, body.demo #content, body.demo #footer { display: none; }
 #cytoweb, #side { border: 1px #cfcfcf solid; -moz-box-shadow: 0 0 50px 
#bbbbbb; -webkit-box-shadow: 0 0 50px #bbbbbb; box-shadow: 0 0 50px #bbbbbb; }
@@ -137,14 +137,15 @@
 .save_screen .corner span { color: #ffffff; line-height: 1; width: 140px; 
margin: 20px 0 0 30px; display: block; }
 .save_screen .corner .icon { width: 64px; height: 64px; background-image: 
url("../../img/icons/oxygen/64x64/actions/back.png"); position: absolute; left: 
30px; top: 60px; }
 .save_screen .description { color: #707070; text-align: center; margin-bottom: 
1em; width: 100%; }
-.save_screen .selections { height: 250px; width: 500px; top: 50%; margin: 
-125px auto 0 auto; position: relative; }
+.save_screen .selections { height: 250px; width: 626px; top: 50%; margin: 
-125px auto 0 auto; position: relative; }
 .save_screen .selection { cursor: pointer; float: left; width: 128px; margin: 
1em; position: relative; z-index: 9999; }
 .save_screen .selection label { display: block; position: absolute; right: 
20px; top: 8px; z-index: 10000; color: #707070; }
 .save_screen .selection span { font-size: 80%; color: #0b94b1; }
-.save_screen .icon { width: 128px; height: 128px; background: 
url("../../img/icons/oxygen/128x128/mimetypes/empty.png"); position: relative; 
z-index: 9999;  }
-#save_pdf .icon { background: 
url("../../img/icons/oxygen/128x128/mimetypes/pdf.png"); }
+.save_screen .icon { width: 128px; height: 128px; background: 
url("../../img/icons/oxygen/128x128/mimetypes/empty.png"); position: relative; 
z-index: 9999; }
 #save_xgmml .icon { background: 
url("../../img/icons/oxygen/128x128/mimetypes/xml.png"); }
 #save_graphml .icon { background: 
url("../../img/icons/oxygen/128x128/mimetypes/xml.png"); }
+#save_pdf .icon { background: 
url("../../img/icons/oxygen/128x128/mimetypes/pdf.png"); }
+#save_png .icon { background: url("../../img/icons/png.png"); }
 
 /* screens */
 .screen { opacity: 0.99 /* needs to be for firefox cytoweb recalculate layout 
*/; width: 100%; height: 100%; position: absolute; left: 0; top: 0; background: 
#ffffff ; background: rgba(255, 255, 255, 0.85); z-index: 9999;  }

Modified: cytoscapeweb/trunk/website/src/css/content/download.css
===================================================================
--- cytoscapeweb/trunk/website/src/css/content/download.css     2010-02-04 
22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/css/content/download.css     2010-02-04 
22:53:45 UTC (rev 19194)
@@ -5,4 +5,7 @@
 .subtitle { padding-top: 0.5em; }
 
 /* emphasise the download of the latest--most supported--version */
-.subtitle.latest .dl { border: 1px solid #c1c1c1; border-radius: 4px; 
-moz-border-radius: 4px; -webkit-border-radius: 4px; padding: 0.25em; 
background: #62977c url("../../img/layout/big_red_button.png") repeat-x center 
center; color: #ffffff; text-decoration: none; }
\ No newline at end of file
+.subtitle.latest .dl { border: 1px solid #c1c1c1; border-radius: 4px; 
-moz-border-radius: 4px; -webkit-border-radius: 4px; padding: 0.25em; 
background: #62977c url("../../img/layout/big_red_button.png") repeat-x center 
center; color: #ffffff; text-decoration: none; }
+.relase_details { margin-top: 0.5em; }
+.relase_details h3 { margin-top: 0; }
+.relase_details .notes { display: none; padding: 0em 0.25em 0.25em 0.25em; 
border: 1px solid #c1c1c1; border-radius: 4px; -moz-border-radius: 4px; 
-webkit-border-radius: 4px; }

Modified: cytoscapeweb/trunk/website/src/css/content/home.css
===================================================================
--- cytoscapeweb/trunk/website/src/css/content/home.css 2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/css/content/home.css 2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,11 +1,11 @@
 /* main */
-#content.full { padding: 50px; }
+#content.full { padding: 30px 50px; }
 
 /* side links to right */
 #side_links { float: right; width: 230px; }
 #side_links a { text-decoration: underline; }
 .link a { text-decoration: none !important; }
-.button { text-align: center; cursor: pointer; background: #097288 
url("../../img/layout/button_blue.png") repeat-x top center; border: 1px solid 
#adadad; height: 36px; font-size: 1.4em; line-height: 36px; padding: 0 0.5em 0 
0.5em; border-radius: 8px; -moz-border-radius: 8px; -webkit-border-radius: 8px; 
color: #ffffff; }
+.button { text-align: center; cursor: pointer; background: #097288 
url("../../img/layout/button_blue.png") repeat-x top center; border: 1px solid 
#adadad; height: 36px; font-size: 1.25em; line-height: 36px; padding: 0 0.5em 0 
0.5em; border-radius: 8px; -moz-border-radius: 8px; -webkit-border-radius: 8px; 
color: #ffffff; }
 #download_latest { background: #9a0b0b 
url("../../img/layout/big_red_button.png") top center repeat-x; }
 #download a { color: #ffffff; text-decoration: none; }
 #download { margin-bottom: 3em; }

Modified: cytoscapeweb/trunk/website/src/css/content.css
===================================================================
--- cytoscapeweb/trunk/website/src/css/content.css      2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/css/content.css      2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,8 +1,3 @@
 
 /* link out logos */
-#utoronto_link { background-image: url("../img/layout/logos/utoronto.png"); 
height: 38px; margin: 10px 0 11px 0; width: 97px; }
-#ccbr_link { background-image: url("../img/layout/logos/ccbr.png"); height: 
41px; margin: 9px 0 9px 0; width: 143px; }
 #cytoscape_link { background-image: url("../img/layout/logos/cytoscape.png"); 
height: 34px; margin: 10px 0 15px 0; width: 87px; }
-
-/* cytoweb logo */
-#logo { height: 31px; width: 185px; margin: 27px 0 27px 0; background-image: 
url("../img/layout/cytoscape_web_logo.png"); }

Modified: cytoscapeweb/trunk/website/src/css/layout.css
===================================================================
--- cytoscapeweb/trunk/website/src/css/layout.css       2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/css/layout.css       2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,7 +1,7 @@
 /* overall */
 * { margin: 0; padding: 0; background-color: transparent; border: 0; 
outline-style: none; }
 html { width: 100%; overflow-y: scroll; }
-body, html { background-color: #ffffff; }
+body, html { background-color: #fafafa; }
 body { line-height: 1.5; color: #000000; font-family: Helvetica, Arial, 
Verdana, sans-serif; font-size: 14px; width: 950px;  margin: 0 auto 0 auto; 
padding: 0 22px 0 22px; }
 a, .like_link { color: #0b94b1; text-decoration: underline; cursor: pointer; }
 a[rel=external] { background:transparent url(../img/layout/external_link.png) 
no-repeat scroll right center; padding-right:12px; }
@@ -52,18 +52,20 @@
 
 /* header */
 #header { height: 88px; }
+#header a { text-decoration: none; }
 #navigation_links { float: left; }
 #navigation_links ul { height: 88px; list-style: none; display: block; margin: 
0 0 0 1em; }
 #navigation_links li { display: block; list-style: none; float: left; height: 
100%; margin: 0 0 0 1em; line-height: 88px; }
 #navigation_links a { text-decoration: none; padding: 0.3em 0.5em 0.3em 0.5em; 
}
 #navigation_links li.selected a { background-color: #0b94b1; color: #ffffff; 
border-radius: 4px; -moz-border-radius: 4px; -webkit-border-radius: 4px; }
 #navigation_links a:hover { text-decoration: underline; }
-#logo { float: left; }
-#logo span { display: none; }
+/* cytoweb logo */
+#logo { float: left; height: 72px; width: 188px; margin: 8px; background: 
url("../img/layout/cytoscape_web_logo.png") no-repeat; }
+#logo div { padding: 10px 0 0 78px; color: #000000; font-size: 1.75em; 
font-family: Tahoma,Gill Sans,Arial,sans-serif; line-height: 1; }
 #search { float: right; height: 22px; margin: 30px 0 0 0; border: #c1c1c1 
solid 1px; border-radius: 4px; -moz-border-radius: 4px; -webkit-border-radius: 
4px; }
 #search.focus { -moz-box-shadow: 0 0 5px #0b94b1; -webkit-box-shadow: 0 0 5px 
#0b94b1; box-shadow: 0 0 5px #0b94b1; }
 #search input:focus { -moz-box-shadow: none; -webkit-box-shadow: none; 
box-shadow: none; }
-#search input { padding: 0.25em; outline: none; border: none; color: #c1c1c1; 
border: 0; }
+#search input { background-color: #ffffff; padding: 0.25em; outline: none; 
border: none; color: #c1c1c1; border: 0; }
 #search input:focus { color: #000000; }
 #search_input { float: left; }
 #search_button { cursor: pointer; float: left; width: 22px; height: 100%; 
background: #aeaeae url("../img/layout/go.png") no-repeat center center; 
border-radius: 0; -moz-border-radius: 0; -webkit-border-radius: 0; }
@@ -72,18 +74,11 @@
 #copyright { text-align: right; font-size: 80%; color: #c6c6c6; float: right; 
width: 100%; margin-top: -2em; }
 
 /* footer */
-#footer { height: 59px; width: 952px; background-image: 
url("../img/layout/footer.png"); -moz-box-shadow: 0 0 50px #bbbbbb; 
-webkit-box-shadow: 0 0 50px #bbbbbb; box-shadow: 0 0 50px #bbbbbb; }
-#footer_left { float: left; height: 100%; width: 2px; background-image: 
url("../img/layout/footer_left.png"); }
-#footer_right { float: left; height: 100%; width: 2px; background-image: 
url("../img/layout/footer_right.png"); }
-#footer_content { float: left; height: 100%; width: 948px; }
-#footer_content ul { margin: 0; list-style: none; float: left; }
-#footer_content li { margin: 0; float: left; padding: 0 0 0 15px; }
-#footer_content a { text-decoration: none; border: 0; opacity: 0.5; display: 
block; }
-#footer_content a:hover { opacity: 1; }
-#footer_content a span { display: none; }
+#footer { color: #777777; text-align: center; font-size: 0.85em; padding-top: 
24px; }
+#footer a { text-decoration: none; background: none; padding-right: 0; }
 
 /* page */
-#page { border: 1px #cfcfcf solid; margin: 0 auto 0 auto; width: 950px; 
-moz-box-shadow: 0 0 50px #bbbbbb; -webkit-box-shadow: 0 0 50px #bbbbbb; 
box-shadow: 0 0 50px #bbbbbb; }
+#page { background-color: #ffffff; border: 1px #cfcfcf solid; margin: 0 auto 0 
auto; width: 950px; -moz-box-shadow: 0 0 26px #bbbbbb; -webkit-box-shadow: 0 0 
26px #bbbbbb; box-shadow: 0 0 26px #bbbbbb; }
 #page_navigation { background-color: #abcfd6; float: left; width: 100%; }
 #page_navigation ul { margin: 0; list-style: none; display: block; }
 #page_navigation li { margin: 0; display: block; list-style: none; float: 
left; border-right: #bfdae0 solid 1px; padding: 4px 8px 4px 8px; }

Modified: cytoscapeweb/trunk/website/src/file/example_code/getting_started.html
===================================================================
--- cytoscapeweb/trunk/website/src/file/example_code/getting_started.html       
2010-02-04 22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/file/example_code/getting_started.html       
2010-02-04 22:53:45 UTC (rev 19194)
@@ -4,12 +4,12 @@
     <head>
         <title>Cytoscape Web example</title>
         
+        <!-- JSON support for IE (needed to use JS API) -->
+        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
+        
         <!-- Flash embedding utility (needed to embed Cytoscape Web) -->
         <script type="text/javascript" 
src="/js/cytoscape_web/AC_OETags.min.js"></script>
         
-        <!-- JSON support for IE (needed to use JS API) -->
-        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
-        
         <!-- Cytoscape Web JS API (needed to reference 
org.cytoscapeweb.Visualization) -->
         <script type="text/javascript" 
src="/js/cytoscape_web/cytoscapeweb.min.js"></script>
         

Modified: cytoscapeweb/trunk/website/src/file/example_code/interacting.html
===================================================================
--- cytoscapeweb/trunk/website/src/file/example_code/interacting.html   
2010-02-04 22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/file/example_code/interacting.html   
2010-02-04 22:53:45 UTC (rev 19194)
@@ -4,8 +4,8 @@
     <head>
         <title>Cytoscape Web example</title>
         
+        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
         <script type="text/javascript" 
src="/js/cytoscape_web/AC_OETags.min.js"></script>
-        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
         <script type="text/javascript" 
src="/js/cytoscape_web/cytoscapeweb.min.js"></script>
         
         <script type="text/javascript">

Modified: cytoscapeweb/trunk/website/src/file/example_code/style.html
===================================================================
--- cytoscapeweb/trunk/website/src/file/example_code/style.html 2010-02-04 
22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/file/example_code/style.html 2010-02-04 
22:53:45 UTC (rev 19194)
@@ -4,8 +4,8 @@
     <head>
         <title>Cytoscape Web example</title>
         
+        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
         <script type="text/javascript" 
src="/js/cytoscape_web/AC_OETags.min.js"></script>
-        <script type="text/javascript" 
src="/js/cytoscape_web/json2.min.js"></script>
         <script type="text/javascript" 
src="/js/cytoscape_web/cytoscapeweb.min.js"></script>
         
         <script type="text/javascript">

Added: cytoscapeweb/trunk/website/src/img/icons/png.png
===================================================================
(Binary files differ)


Property changes on: cytoscapeweb/trunk/website/src/img/icons/png.png
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream

Deleted: cytoscapeweb/trunk/website/src/img/layout/cytoscape_lite_logo.png
===================================================================
(Binary files differ)

Modified: cytoscapeweb/trunk/website/src/img/layout/cytoscape_web_logo.png
===================================================================
(Binary files differ)

Deleted: cytoscapeweb/trunk/website/src/img/layout/footer.png
===================================================================
(Binary files differ)

Deleted: cytoscapeweb/trunk/website/src/img/layout/footer_left.png
===================================================================
(Binary files differ)

Deleted: cytoscapeweb/trunk/website/src/img/layout/footer_right.png
===================================================================
(Binary files differ)

Modified: cytoscapeweb/trunk/website/src/js/content/demo.js
===================================================================
--- cytoscapeweb/trunk/website/src/js/content/demo.js   2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/js/content/demo.js   2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -151,9 +151,7 @@
     
     $("body").html('\
                         <div id="header" class="slice">\
-                            <a href="/">\
-                                <div id="logo"></div>\
-                            </a>\
+                            <a href="/"><div id="logo"></div></a>\
                             <div class="text">Try out the features of 
Cytoscape Web to see how you would use it in your site!</div>\
                         </div>\
                         <div id="cytoweb">\
@@ -750,9 +748,15 @@
         make_selection(
             "pdf",
             "PDF",
-            "Portable Document Format",
+            "Vector Image",
             true
         );
+        make_selection(
+               "png",
+               "PNG",
+               "Bitmap Image",
+               true
+        );
         
         hide_save_menu();
     }

Modified: cytoscapeweb/trunk/website/src/js/content/download.js
===================================================================
--- cytoscapeweb/trunk/website/src/js/content/download.js       2010-02-04 
22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/js/content/download.js       2010-02-04 
22:53:45 UTC (rev 19194)
@@ -3,8 +3,32 @@
     var url = "" + $(window).attr("location");
 
     if( url.match(/.+#now/) ) {
-    
         window.location.href = $("a.dl:first").attr("href");
     }
     
+    
+    $(".relase_details .bug_id").each(function() {
+        var bug_id = $(this).text();
+        var bug_link = '<a 
href="http://cbio.mskcc.org/cytoscape/bugs/view.php?id='+bug_id+'" 
rel="external" target="_blank">'+bug_id+'</a>';
+        $(this).html(bug_link);
+    });
+    
+    $(".relase_details").each(function() {
+       var html = $(this).html();
+       html = '<span class="like_link pre_plain_link">Details</span>' +
+              '<div class="notes">' + html + '</div>';
+       $(this).html(html);
+       
+       $(this).find(".bug_fixes").before('<h3>Fixed Issues:</h3>');
+       $(this).find(".other_changes").before('<h3>Other Changes:</h3>');
+    });
+    
+    $(".relase_details .like_link:first-child").click(function() {
+       var notes = $(this).parent().find(".notes");
+       if (notes.is(":visible")) {
+               notes.hide();
+       } else {
+               notes.show();
+       }
+    });
 });
\ No newline at end of file

Modified: cytoscapeweb/trunk/website/src/js/layout/layout.js
===================================================================
--- cytoscapeweb/trunk/website/src/js/layout/layout.js  2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/js/layout/layout.js  2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -7,7 +7,6 @@
         this.target = "_blank";
        });
 
-
     var search_default_text = $("#search_input").find("input").val();
     
     $("#search_input").find("input").blur(function(){
@@ -22,15 +21,6 @@
         $("#search").addClass("focus");
     });
     
-    var footer_default_opacity = $("#footer_content").find("a").css("opacity");
-    var footer_over_opacity = 1;
-    
-    $("#footer_content").find("a").mouseover(function(){
-        $(this).fadeTo(animation_speed, footer_over_opacity);
-    }).mouseout(function(){
-        $(this).fadeTo(animation_speed, footer_default_opacity);
-    }).mouseout();
-    
     $("pre").each(function(){
         if( $(this).find("code").length > 0 ){
             var pre = $(this);
@@ -64,7 +54,6 @@
         }
     });
     
-    
     function make_pre_expandable(){
         var delay_before_closing_pre = 0;
         $("pre").each(function(){

Modified: cytoscapeweb/trunk/website/src/php/content/home.declaration.php
===================================================================
--- cytoscapeweb/trunk/website/src/php/content/home.declaration.php     
2010-02-04 22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/php/content/home.declaration.php     
2010-02-04 22:53:45 UTC (rev 19194)
@@ -6,8 +6,10 @@
     $date = "";
     
     foreach($apis as $ver_name => $api){
-        $version = $api->version;
-        $date = $api->date;
+        if($api->version > $version){
+               $version = $api->version;
+               $date = $api->date;
+        }
     }
 
     include_js("/js/cytoscape_web/json2.min.js");

Modified: cytoscapeweb/trunk/website/src/php/content/home.php
===================================================================
--- cytoscapeweb/trunk/website/src/php/content/home.php 2010-02-04 22:53:28 UTC 
(rev 19193)
+++ cytoscapeweb/trunk/website/src/php/content/home.php 2010-02-04 22:53:45 UTC 
(rev 19194)
@@ -1,6 +1,6 @@
 <div id="about">
     <div id="use_line">
-        <span>Use Cytoscape Web to embed graphs in your site, like this:</span>
+        <span>Easily embed graphs in your website, like this:</span>
     </div>
     
     <div id="example">

Modified: cytoscapeweb/trunk/website/src/php/layout/footer.php
===================================================================
--- cytoscapeweb/trunk/website/src/php/layout/footer.php        2010-02-04 
22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/php/layout/footer.php        2010-02-04 
22:53:45 UTC (rev 19194)
@@ -4,17 +4,24 @@
         </div> 
        
         <div id="footer" class="slice">
-            <div id="footer_left"></div>
-            
-            <div id="footer_content">
-                <ul>
-                    <li><a id="utoronto_link" target="_blank" 
href="http://www.utoronto.ca";><span>The University of Toronto</span></a></li>
-                    <li><a id="ccbr_link" target="_blank" 
href="http://tdccbr.med.utoronto.ca";><span>The Donnelly Centre for Cellular and 
Biomolecular Research</span></a></li>
-                    <li><a id="cytoscape_link" target="_blank" 
href="http://www.cytoscape.org";><span>Cytoscape</span></a></li>
-                </ul>
-            </div>
-            
-            <div id="footer_right"></div>
+                       <p>
+                               Funding for <a 
href="http://www.cytoscape.org";>Cytoscape</a> is provided by a federal grant 
from the U.S. 
+                               <a href="http://www.nigms.nih.gov";>National 
Institute of General Medical Sciences (NIGMS)</a> 
+                               of the <a href="http://www.nih.gov";>National 
Institutes of Health (NIH)</a> under award 
+                               number GM070743-01 and the U.S. <a 
href="http://www.nsf.gov";>National Science Foundation (NSF)</a>.
+                       </p>
+                       <p>
+                               <a href="http://www.systemsbiology.org";> ISB 
</a> | 
+                               <a href="http://www.ucsd.edu";> UCSD </a> | 
+                               <a href="http://cbio.mskcc.org";> MSKCC </a> | 
+                               <a href="http://www.pasteur.fr";> Pasteur </a> | 
+                               <a href="http://www.agilent.com/";> Agilent </a> 
| 
+                               <a href="http://www.ucsf.edu/";> UCSF </a> |
+                               <a href="http://www.unilever.com";> Unilever 
</a> |
+                               <a href="http://www.utoronto.ca";> Toronto </a> |
+                               <a 
href="http://portal.ncibi.org/gateway/index.html";> NCIBI </a>
+                       </p>
+                       <p>&copy; 2001-2010 Cytoscape Consortium </p>
         </div>
 
     </body>

Modified: cytoscapeweb/trunk/website/src/php/layout/header.php
===================================================================
--- cytoscapeweb/trunk/website/src/php/layout/header.php        2010-02-04 
22:53:28 UTC (rev 19193)
+++ cytoscapeweb/trunk/website/src/php/layout/header.php        2010-02-04 
22:53:45 UTC (rev 19194)
@@ -57,7 +57,7 @@
     <body>
        
         <div id="header" class="slice">
-            <a href="/"><div id="logo"><span>Cytoscape Web</span></div></a>
+            <a href="/"><div id="logo"></div></a>
             
             <div id="navigation_links">
                 <ul>

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