Author: ruschein
Date: 2010-02-11 14:52:21 -0800 (Thu, 11 Feb 2010)
New Revision: 19304
Added:
csplugins/trunk/ucsd/ruschein/ModFind/tests/org/idekerlab/ModFindPlugin/
Removed:
csplugins/trunk/ucsd/ruschein/ModFind/tests/org/idekerlab/ModFinderPlugin/
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/BFEdge.java
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch2.java
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch_Runner.java
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/NestedNetworkCreator.java
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/SearchTask.java
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/networks/linkedNetworks/TypedLinkNetwork.java
Log:
Completed plugi renaming.
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/BFEdge.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/BFEdge.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/BFEdge.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -1,4 +1,4 @@
-package org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment;
+package org.idekerlab.ModFindPlugin.networks.ModFinder;
import java.util.*;
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch2.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch2.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch2.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -1,4 +1,4 @@
-package org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment;
+package org.idekerlab.ModFindPlugin.networks.ModFinder;
import java.util.ArrayList;
import java.util.HashMap;
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch_Runner.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch_Runner.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/ModFinder/HCSearch_Runner.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -1,4 +1,4 @@
-package org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment;
+package org.idekerlab.ModFindPlugin.networks.ModFinder;
import java.io.File;
import java.util.ArrayList;
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/NestedNetworkCreator.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/NestedNetworkCreator.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/NestedNetworkCreator.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -8,7 +8,7 @@
import java.util.PriorityQueue;
import java.util.Set;
-import org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.BFEdge;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.BFEdge;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkEdge;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkNetwork;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkNodeModule;
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/SearchTask.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/SearchTask.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/SearchTask.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -3,10 +3,10 @@
import java.util.ArrayList;
import org.idekerlab.ModFindPlugin.networks.SFNetwork;
-import org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.BFEdge;
-import
org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.HCScoringFunction;
-import org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.HCSearch2;
-import
org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.SouravScore;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.BFEdge;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.HCScoringFunction;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.HCSearch2;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.SouravScore;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkEdge;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkNetwork;
import org.idekerlab.ModFindPlugin.networks.linkedNetworks.TypedLinkNodeModule;
Modified:
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/networks/linkedNetworks/TypedLinkNetwork.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/networks/linkedNetworks/TypedLinkNetwork.java
2010-02-11 22:44:43 UTC (rev 19303)
+++
csplugins/trunk/ucsd/ruschein/ModFind/src/org/idekerlab/ModFindPlugin/networks/linkedNetworks/TypedLinkNetwork.java
2010-02-11 22:52:21 UTC (rev 19304)
@@ -3,7 +3,7 @@
import java.util.*;
import org.idekerlab.ModFindPlugin.utilities.IIterator;
import org.idekerlab.ModFindPlugin.utilities.files.FileIterator;
-import org.idekerlab.ModFindPlugin.networks.denovoPGNetworkAlignment.BFEdge;
+import org.idekerlab.ModFindPlugin.networks.ModFinder.BFEdge;
/**
Copied: csplugins/trunk/ucsd/ruschein/ModFind/tests/org/idekerlab/ModFindPlugin
(from rev 19303,
csplugins/trunk/ucsd/ruschein/ModFind/tests/org/idekerlab/ModFinderPlugin)
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