Author: kono
Date: 2010-02-16 15:02:12 -0800 (Tue, 16 Feb 2010)
New Revision: 19339
Modified:
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/MCODEPlugin.java
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/action/MCODEMainPanelAction.java
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/ui/MCODEMainPanel.java
Log:
Imports are organized.
Modified: csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/MCODEPlugin.java
===================================================================
--- csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/MCODEPlugin.java
2010-02-16 22:57:47 UTC (rev 19338)
+++ csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/MCODEPlugin.java
2010-02-16 23:02:12 UTC (rev 19339)
@@ -36,35 +36,32 @@
**/
package csplugins.mcode;
-import cytoscape.Cytoscape;
-
-import cytoscape.plugin.CytoscapePlugin;
-
-import javax.swing.JMenu;
import javax.swing.JMenuItem;
import csplugins.mcode.internal.action.MCODEMainPanelAction;
+import cytoscape.Cytoscape;
+import cytoscape.plugin.CytoscapePlugin;
/**
- * MCODE Network Clustering Plug In.
- * Clusters a graph.
+ * MCODE Network Clustering Plug In. Clusters a graph.
*
* Refactored by Kei Ono for Group compatibility.
- *
+ *
* @author Gary Bader
* @author Vuk Pavlovic
*/
public class MCODEPlugin extends CytoscapePlugin {
-
+
// Name of the viewer
public static final String DEFAULT_VIEWER_NAME = "moduleFinderViewer";
-
+
/**
* Constructor for the MCODE plugin.
*/
public MCODEPlugin() {
- final JMenuItem menuItem = new JMenuItem("MCODE...");
- menuItem.addActionListener(new MCODEMainPanelAction());
-
Cytoscape.getDesktop().getCyMenus().getMenuBar().getMenu("Plugins.Module
Finders...").add(menuItem);
+ final JMenuItem menuItem = new JMenuItem("MCODE...");
+ menuItem.addActionListener(new MCODEMainPanelAction());
+ Cytoscape.getDesktop().getCyMenus().getMenuBar().
+ getMenu("Plugins.Module Finders...").add(menuItem);
}
}
Modified:
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/action/MCODEMainPanelAction.java
===================================================================
---
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/action/MCODEMainPanelAction.java
2010-02-16 22:57:47 UTC (rev 19338)
+++
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/action/MCODEMainPanelAction.java
2010-02-16 23:02:12 UTC (rev 19339)
@@ -1,20 +1,17 @@
package csplugins.mcode.internal.action;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.JOptionPane;
+import javax.swing.SwingConstants;
+
+import csplugins.mcode.internal.ui.MCODEMainPanel;
import cytoscape.Cytoscape;
import cytoscape.view.CytoscapeDesktop;
import cytoscape.view.cytopanels.CytoPanel;
import cytoscape.view.cytopanels.CytoPanelState;
-import cytoscape.visual.VisualMappingManager;
-import javax.swing.*;
-
-import csplugins.mcode.MCODEPlugin;
-import csplugins.mcode.internal.ui.MCODEMainPanel;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.net.URL;
-
/**
* * Copyright (c) 2004 Memorial Sloan-Kettering Cancer Center
* *
@@ -68,10 +65,9 @@
* @param event Menu Item Selected.
*/
public void actionPerformed(ActionEvent event) {
- //display MCODEMainPanel in left cytopanel
- CytoscapeDesktop desktop = Cytoscape.getDesktop();
- CytoPanel cytoPanel = desktop.getCytoPanel(SwingConstants.WEST);
-
+ //display MCODEMainPanel in left cytopanel
+ final CytoPanel cytoPanel =
Cytoscape.getDesktop().getCytoPanel(SwingConstants.WEST);
+
int index = cytoPanel.indexOfComponent(mainPanel);
if ( index <= 0 ) {
Modified:
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/ui/MCODEMainPanel.java
===================================================================
---
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/ui/MCODEMainPanel.java
2010-02-16 22:57:47 UTC (rev 19338)
+++
csplugins/trunk/ucsd/mes/MCODE3/src/csplugins/mcode/internal/ui/MCODEMainPanel.java
2010-02-16 23:02:12 UTC (rev 19339)
@@ -1,26 +1,37 @@
package csplugins.mcode.internal.ui;
-import cytoscape.Cytoscape;
-import cytoscape.view.CytoscapeDesktop;
-import cytoscape.view.cytopanels.CytoPanel;
-import cytoscape.view.cytopanels.CytoPanelState;
+import java.awt.BorderLayout;
+import java.awt.FlowLayout;
+import java.awt.GridLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+import java.beans.PropertyChangeEvent;
+import java.beans.PropertyChangeListener;
+import java.text.DecimalFormat;
-import javax.swing.*;
+import javax.swing.AbstractAction;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.ButtonGroup;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JFormattedTextField;
+import javax.swing.JLabel;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.JToolTip;
+import javax.swing.SwingConstants;
import csplugins.mcode.internal.MCODECurrentParameters;
import csplugins.mcode.internal.MCODEParameterSet;
import csplugins.mcode.internal.action.MCODEAboutAction;
import csplugins.mcode.internal.action.MCODEHelpAction;
import csplugins.mcode.internal.action.MCODEScoreAndFindAction;
+import cytoscape.Cytoscape;
+import cytoscape.view.cytopanels.CytoPanel;
-import java.awt.*;
-import java.awt.event.ActionEvent;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyChangeListener;
-import java.text.DecimalFormat;
-
/**
* * Copyright (c) 2004 Memorial Sloan-Kettering Cancer Center
* *
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