Author: laylaoesper
Date: 2010-07-20 11:32:28 -0700 (Tue, 20 Jul 2010)
New Revision: 20972
Modified:
csplugins/trunk/soc/layla/SemanticSummary/README.TXT
csplugins/trunk/soc/layla/SemanticSummary/src/cytoscape/csplugins/semanticsummary/SemanticSummary.jar
Log:
New jar for version 0.5 and updates to README file.
Modified: csplugins/trunk/soc/layla/SemanticSummary/README.TXT
===================================================================
--- csplugins/trunk/soc/layla/SemanticSummary/README.TXT 2010-07-20
17:23:10 UTC (rev 20971)
+++ csplugins/trunk/soc/layla/SemanticSummary/README.TXT 2010-07-20
18:32:28 UTC (rev 20972)
@@ -60,57 +60,3 @@
2) Locate and install the latest Semantic Network Summary plugin in the
"Analysis"
Section of "Available for Install".
-
-
-How to compile Semantic Network Summary:
-==============================
-Requirements:
-------------
- * installed Cytoscape 2.6.x (from
http://cytoscape.org)
- * Sun Java Development Kit (JDK/SDK) Version 1.5.x (from
http://java.sun.com)
- * Apache Ant 1.7 or newer (from
http://ant.apache.org)
- * Enrichment Map source code (from
http://baderlab.org/Software/EnrichmentMap)
-
-Configuration:
----------------
-* Make sure that Java and Ant are properly installed and can be run from the
- command line. (Test by running "java -version", "javac -version" and
- "ant -version" from the command line)
-* either:
- - Set an environment variable called CYTOSCAPE_HOME
- pointing to your Cytoscape 2.6 installation
- or:
- - place a file called "enrichment_map.properties" in the directory of the
- unpacked source code distribution of Enrichment Map (the same directory
that
- contains the file build.xml)
- containing a line like this (choose one depending on your platform and
- adjust to the actual installation directory and the version you are
using):
-
- Apple:
- CYTOSCAPE_HOME=/Applications/Cytoscape_v2.6.x
- Linux:
- CYTOSCAPE_HOME=/usr/local/Cytoscape_v2.6.x
- Windows:
- CYTOSCAPE_HOME=C:/Program Files/Cytoscape-v2.6.x
-
-Compile:
---------
-* open a new Command line (Shell) and run one of the following commands:
- - to compile Enrichment Map and pack it into a JAR archive:
- ant jars
- The EnrichmentMap.jar will appear in a folder named "jars".
-
- - to just compile Enrichment Map (without making a jar):
- ant compile
- The compiled classes will appear in a folder named "classes".
-
- - to pack a source code release:
- ant release_source
- This will create EnrichmentMapPlugin_v${Version}_src.tar.gz and
- EnrichmentMapPlugin_v${Version}_src.zip in the current directory.
-
- - to pack a binary release:
- ant release_binary
- This will generate a file EnrichmentMapPlugin_v${Version}.zip
- that contains the EnrichmentMap.jar, README.TXT and LICENSE.TXT
-
\ No newline at end of file
Modified:
csplugins/trunk/soc/layla/SemanticSummary/src/cytoscape/csplugins/semanticsummary/SemanticSummary.jar
===================================================================
(Binary files differ)
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