Author: mes
Date: 2010-07-30 17:15:53 -0700 (Fri, 30 Jul 2010)
New Revision: 21105
Removed:
coreplugins/trunk/PSI-MI/build.xml
coreplugins/trunk/PSI-MI/config/
coreplugins/trunk/PSI-MI/resources/
coreplugins/trunk/PSI-MI/schemas/
Log:
cleanup
Deleted: coreplugins/trunk/PSI-MI/build.xml
===================================================================
--- coreplugins/trunk/PSI-MI/build.xml 2010-07-31 00:15:04 UTC (rev 21104)
+++ coreplugins/trunk/PSI-MI/build.xml 2010-07-31 00:15:53 UTC (rev 21105)
@@ -1,151 +0,0 @@
-<?xml version="1.0"?>
-<!-- build.xml - Build file for Cytoscape PSI-MI Plug In -->
-<project default="all" name="Cytoscape PSI-MI PlugIn">
- <!-- Version Numbers -->
- <property name="psi_mi_version" value="0_3"/>
- <!-- Define Check Style Task -->
- <taskdef resource="checkstyletask.properties"/>
- <!-- The directory containing source code -->
- <property name="src.dir" value="src"/>
- <!-- The directory containing resources -->
- <property name="resources.dir" value="resources"/>
- <!-- The directory containing the configuration files -->
- <property name="config.dir" value="config"/>
- <!-- Temporary build directories -->
- <property name="build.dir" value="build"/>
- <property name="build.classes" value="${build.dir}/classes"/>
- <!-- Jars directory -->
- <property name="jars.dir" value="${build.dir}/jars"/>
- <!-- PlugIns directory -->
- <property name="plugins.dir" value="plugins"/>
- <!-- Global "magic" property for <javac> -->
- <property name="build.compiler" value="modern"/>
- <!-- Junit Directory -->
- <property name="junit.dir" value="${build.dir}/junit"/>
-
- <!-- Location of Cytoscape Source -->
- <property name="cytoscape.dir" value="../../cytoscape"/>
-
-
- <!-- For XJC compiler task -->
- <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">
- <classpath refid="classpath" />
- </taskdef>
-
- <!-- Classpath with all lib JAR Files -->
- <path id="classpath">
- <pathelement path="${build.classes}"/>
- <fileset dir="${cytoscape.dir}/lib">
- <include name="*.jar"/>
- </fileset>
- <fileset dir="${cytoscape.dir}/">
- <include name="cytoscape.jar"/>
- </fileset>
- <fileset dir="${cytoscape.dir}/lib/build-libs/">
- <include name="*.jar" />
- </fileset>
- </path>
-
- <!-- Target to create the build directories prior to compilation -->
- <target name="prepare">
- <mkdir dir="${build.dir}"/>
- <mkdir dir="${build.classes}"/>
- <mkdir dir="${jars.dir}"/>
- </target>
-
- <!-- Target to clean out all directories -->
- <target description="Removes all generated files." name="clean">
- <delete dir="${build.dir}"/>
- <delete dir="${jars.dir}"/>
- <delete dir="${plugins.dir}"/>
- <delete dir="${junit.dir}"/>
- <delete dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi1"/>
- <delete dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi25"/>
- </target>
-
- <!-- Target to compile all code -->
- <target depends="prepare, bind" description="Compiles all source code."
- name="compile">
- <javac debug="true" debuglevel="source,lines,var"
- source="1.5"
- target="1.5"
- destdir="${build.classes}" nowarn="on" srcdir="${src.dir}"
deprecation="true">
- <classpath refid="classpath"/>
- </javac>
- </target>
-
- <!-- Generate package using XJC compiler -->
- <target name="bind" description="Run XJC to generate new packages.">
- <mkdir dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi1"/>
- <mkdir dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi25"/>
- <xjc schema="schemas/MIF1.xsd"
- destdir="${src.dir}"
- package="org.cytoscape.coreplugin.psi_mi.schema.mi1">
- <produces
dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi1"/>
- <arg value="-nv"/>
- </xjc>
- <xjc schema="schemas/MIF25.xsd"
- destdir="${src.dir}"
- package="org.cytoscape.coreplugin.psi_mi.schema.mi25">
- <produces
dir="${src.dir}/org/cytoscape/coreplugin/psi_mi/schema/mi25"/>
- <arg value="-nv"/>
- </xjc>
- </target>
-
- <!-- Target to Run Cytoscape -->
- <target depends="jar" description="Runs Cytoscape." name="run">
- <copy todir="${plugins.dir}">
- <fileset dir="${jars.dir}"/>
- </copy>
- <copy todir="${plugins.dir}">
- <fileset dir="${cytoscape.dir}/plugins/core"/>
- </copy>
- <java jar="${cytoscape.dir}/cytoscape.jar" fork="true">
- <arg line="-p plugins"/>
- </java>
- </target>
-
- <!-- Target to Run CheckStyle on all Source Code -->
- <!-- Uses the Sun Coding Conventions Configuration -->
- <target description="Checks Sun Coding Conventions" name="check">
- <checkstyle config="${config.dir}/sun_checks.xml">
- <fileset dir="${src.dir}">
- <include name="**/*.java"/>
- <exclude
name="org/cytoscape/coreplugin/psi_mi/schema/**/*.java"/>
- </fileset>
- </checkstyle>
- </target>
-
- <!-- Target to Run All JUnit Tests -->
- <target depends="compile" description="Runs all JUnit Tests" name="test">
- <delete dir="${junit.dir}"/>
- <mkdir dir="${junit.dir}"/>
- <mkdir dir="${junit.dir}/reports"/>
- <junit printsummary="yes" fork="yes" haltonfailure="yes"
dir="${basedir}">
- <formatter type="plain" usefile="false"/>
- <test name="org.cytoscape.coreplugin.psi_mi.test.AllTest"/>
- <classpath refid="classpath"/>
- </junit>
- </target>
-
- <!-- Target to Create PlugIn JAR -->
- <target depends="compile" description="Creates PlugIn JAR" name="jar">
-
- <!-- Start clean -->
- <delete dir="${jars.dir}"/>
- <mkdir dir="${jars.dir}"/>
-
- <!-- Create PSI-MI Jar -->
- <copy todir="${build.classes}/org/cytoscape/coreplugin/psi_mi/plugin"
file="${resources.dir}/plugin.props"/>
- <jar destfile="${jars.dir}/psi_mi.jar">
- <fileset dir="${build.classes}"/>
- <manifest>
- <attribute name="Cytoscape-Plugin"
-
value="org.cytoscape.coreplugin.psi_mi.plugin.PsiMiPlugIn"/>
- </manifest>
- </jar>
- </target>
-
- <!-- Builds and tests everything -->
- <target depends="jar" description="Builds and tests everything"
name="all"/>
-</project>
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