Author: mes
Date: 2010-07-30 17:17:04 -0700 (Fri, 30 Jul 2010)
New Revision: 21107
Removed:
coreplugins/trunk/QuickFind/build.xml
coreplugins/trunk/QuickFind/config/
coreplugins/trunk/QuickFind/testData/
Log:
cleanup
Deleted: coreplugins/trunk/QuickFind/build.xml
===================================================================
--- coreplugins/trunk/QuickFind/build.xml 2010-07-31 00:16:14 UTC (rev
21106)
+++ coreplugins/trunk/QuickFind/build.xml 2010-07-31 00:17:04 UTC (rev
21107)
@@ -1,136 +0,0 @@
-<?xml version="1.0"?>
-<!--
- QuickFind Ant Build Script.
- Author: Ethan Cerami
--->
-
-<project name="QuickFind" default="all" basedir=".">
-
- <!-- The build directory -->
- <!-- All files generated by ant go here -->
- <property name="build.dir" value="${basedir}/build"/>
-
- <!-- The java source directory-->
- <property name="src.dir" value="${basedir}/src"/>
-
- <!-- The lib directory -->
- <!-- Contains all third-party JAR files, required for compilation -->
- <property name="lib.dir" value="lib"/>
-
- <!-- The dist directory -->
- <property name="dist.dir" value="${basedir}/plugins"/>
-
- <!-- The config directory -->
- <property name="config.dir" value="${basedir}/config"/>
-
- <!-- ============= Custom Ant Task Definitions ======================= -->
- <taskdef resource="checkstyletask.properties"/>
-
- <!-- ============ Compilation Control Options =======================
-->
- <property name="compile.debug" value="true"/>
- <property name="compile.deprecation" value="true"/>
- <property name="compile.optimize" value="true"/>
-
- <!-- ==================== Compilation Classpath ======================
-->
- <!--
- NB: Compilation classpath assumes that main cytoscape project is
checked out,
- and compiled.
- -->
- <path id="compile.classpath">
- <pathelement path="${build.dir}/classes"/>
- <fileset dir="../../cytoscape/${lib.dir}">
- <include name="*.jar"/>
- </fileset>
- <fileset dir="../../cytoscape/">
- <include name="cytoscape.jar"/>
- </fileset>
- </path>
-
- <!-- ==================== Clean Target =============================== -->
- <target name="clean"
- description="Deletes all build files and starts fresh">
- <delete dir="${build.dir}"/>
- <delete dir="${dist.dir}"/>
- </target>
-
- <!-- ==================== Compile Target ==============================-->
- <target name="compile" depends="prepare"
- description="Compiles all Java source files">
- <mkdir dir="${build.dir}/classes"/>
- <javac srcdir="${src.dir}"
- source="1.5"
- target="1.5"
- destdir="${build.dir}/classes"
- debug="${compile.debug}"
- deprecation="${compile.deprecation}"
- optimize="${compile.optimize}">
- <classpath refid="compile.classpath"/>
- </javac>
- </target>
-
- <!-- ==================== Jar Target ============================== -->
- <target name="jar" depends="compile"
- description="Creates Plugin Jar: quick_find.jar">
- <copy file="${config.dir}/plugin.props"
todir="${build.dir}/classes/csplugins/quickfind/plugin"/>
- <jar destfile="${dist.dir}/quick_find.jar"
- basedir="${build.dir}/classes">
- <manifest>
- <attribute name="Cytoscape-Plugin"
- value="csplugins.quickfind.plugin.QuickFindPlugIn"/>
- </manifest>
- </jar>
- </target>
-
- <!-- ==================== Run Target ============================== -->
- <target depends="jar" description="Runs Latest Version of Cytoscape with
QuickFind Plugin"
- name="run">
- <copy todir="${dist.dir}">
- <fileset dir="../../cytoscape/plugins/core"/>
- </copy>
- <java classname="cytoscape.CyMain" classpathref="compile.classpath"
- fork="true" maxmemory="1000M">
- <arg line="-N ../../cytoscape/testData/galFiltered.sif -m
../../cytoscape/testData/galExpData.pvals -p plugins"/>
- </java>
- </target>
-
- <!-- ==================== Build and test jar
============================== -->
- <target name="all" depends="jar"/>
-
- <!-- ==================== Prepare Target ============================== -->
- <target name="prepare">
- <!-- Create build directories as needed -->
- <mkdir dir="${build.dir}"/>
- <mkdir dir="${dist.dir}"/>
- <mkdir dir="${build.dir}/classes"/>
-
- <!-- Copy over images / icons -->
- <copy todir="${build.dir}/classes">
- <fileset dir="${src.dir}">
- <include name="**/*.gif"/>
- <include name="**/*.png"/>
- </fileset>
- </copy>
- </target>
-
- <!-- ==================== JUnit Test Target =========================== -->
- <target name="test" description="Runs all JUnit tests" depends="compile">
- <junit printsummary="yes" fork="yes" haltonfailure="yes">
- <formatter type="plain" usefile="false"/>
- <test name="csplugins.test.AllTest"/>
- <classpath refid="compile.classpath"/>
- </junit>
- </target>
-
- <!-- ==================== Checkstyle Target =========================== -->
- <!--
- Target to Run CheckStyle on all Source Code
- Uses the Sun Coding Conventions Configuration
- -->
- <target name="check" description="Runs CheckStyle on all source code">
- <checkstyle config="${config.dir}/sun_checks.xml">
- <fileset dir="${src.dir}/csplugins">
- <include name="**/*.java"/>
- </fileset>
- </checkstyle>
- </target>
-</project>
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