Author: mes
Date: 2010-08-03 12:11:10 -0700 (Tue, 03 Aug 2010)
New Revision: 21142
Modified:
cytoscape/trunk/README.txt
Log:
further updates to README
Modified: cytoscape/trunk/README.txt
===================================================================
--- cytoscape/trunk/README.txt 2010-08-03 19:07:43 UTC (rev 21141)
+++ cytoscape/trunk/README.txt 2010-08-03 19:11:10 UTC (rev 21142)
@@ -19,13 +19,9 @@
cytoscape
+
- +---application/ This directoy contains a maven project that builds and
- + assembles the Cytoscape application jar.
+ +---src/ This directoy contains the source code for the Cytoscape
application.
+
- +---distribution/ Contains a maven project that assembles the Cytoscape
- distribution based on the core plugins and the jar file
- built by application. This directory includes all shell
- scripts, sample data, and licenses for the distribution.
+ +---pom.xml The maven configuration file for the Cytoscape application.
III. New Build Process
@@ -35,31 +31,16 @@
1. Download and install Apache Maven: http://maven.apache.org/
-2. To compile the Cytoscape:
- a. go into the application directory:
+2. To compile the Cytoscape execute maven:
- cd application
+ % mvn install
- b. execute maven:
-
- mvn install
-
3. To run cytoscape:
- a. go into the distribution directory:
- cd distribution
+ % cd target/application-${version}-cytoscape/application-${version}
+ % cytoscape.sh
- b. build the maven assembly:
- mvn assembly:assembly
-
- c. go into the target directory:
-
- cd target/asdf/asdf
-
- d. This will include the basic Cytoscape distribution.
-
-
For questions, email Mike Smoot: [email protected]
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