See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/2196/changes>
Changes: [kono] Method names are changed to parse/toSerializableString in viewmodel-api, and implementations refactored accordingly. ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/presentation-api/trunk A osgi.bnd A src A src/test A src/test/java A src/test/resources A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/view A src/main/java/org/cytoscape/view/presentation A src/main/java/org/cytoscape/view/presentation/PresentationFactory.java A src/main/java/org/cytoscape/view/presentation/RenderingEngine.java A src/main/java/org/cytoscape/view/presentation/property A src/main/java/org/cytoscape/view/presentation/property/StringVisualProperty.java A src/main/java/org/cytoscape/view/presentation/property/ThreeDVisualLexicon.java A src/main/java/org/cytoscape/view/presentation/property/DoubleVisualProperty.java A src/main/java/org/cytoscape/view/presentation/property/TwoDVisualLexicon.java A src/main/java/org/cytoscape/view/presentation/property/BasicVisualLexicon.java A src/main/java/org/cytoscape/view/presentation/property/ColorVisualProperty.java A src/main/java/org/cytoscape/view/presentation/property/BooleanVisualProperty.java A src/main/java/org/cytoscape/view/presentation/VisualItemRenderer.java A src/main/java/org/cytoscape/view/presentation/NavigationPresentation.java A src/main/resources A src/main/resources/META-INF A pom.xml At revision 21164 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.354.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.354.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.354.jar 45243 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.presentation-api [org.cytoscape.view.presentation] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 11 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Presentation api/modules/org.cytoscape$presentation-api/builds/2010-08-03_19-01-18/archive/org.cytoscape/presentation-api/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/src/main/java/org/cytoscape/view/presentation/property/StringVisualProperty.java>:[40,7] org.cytoscape.view.presentation.property.StringVisualProperty is not abstract and does not override abstract method parse(java.lang.String) in org.cytoscape.view.model.VisualProperty <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/src/main/java/org/cytoscape/view/presentation/property/DoubleVisualProperty.java>:[40,7] org.cytoscape.view.presentation.property.DoubleVisualProperty is not abstract and does not override abstract method parse(java.lang.String) in org.cytoscape.view.model.VisualProperty <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/src/main/java/org/cytoscape/view/presentation/property/ColorVisualProperty.java>:[42,7] org.cytoscape.view.presentation.property.ColorVisualProperty is not abstract and does not override abstract method parse(java.lang.String) in org.cytoscape.view.model.VisualProperty <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Presentation%20api/ws/trunk/src/main/java/org/cytoscape/view/presentation/property/BooleanVisualProperty.java>:[40,7] org.cytoscape.view.presentation.property.BooleanVisualProperty is not abstract and does not override abstract method parse(java.lang.String) in org.cytoscape.view.model.VisualProperty [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12 seconds [INFO] Finished at: Tue Aug 03 19:01:37 EDT 2010 [INFO] Final Memory: 47M/489M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://10.20.1.1:7070/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.presentation-api [org.cytoscape.view.presentation] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://10.20.1.1:7070/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: can not autodetect the dialect Communications link failure due to underlying exception: ** BEGIN NESTED EXCEPTION ** java.net.ConnectException MESSAGE: Connection refused STACKTRACE: java.net.ConnectException: Connection refused at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333) at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195) at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366) at java.net.Socket.connect(Socket.java:529) at java.net.Socket.connect(Socket.java:478) at java.net.Socket.<init>(Socket.java:375) at java.net.Socket.<init>(Socket.java:218) at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:256) at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:271) at com.mysql.jdbc.Connection.createNewIO(Connection.java:2771) at com.mysql.jdbc.Connection.<init>(Connection.java:1555) at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:285) at java.sql.DriverManager.getConnection(DriverManager.java:582) at java.sql.DriverManager.getConnection(DriverManager.java:185) at org.sonar.commons.database.DriverDatabaseConnector.getConnection(DriverDatabaseConnector.java:90) at org.sonar.commons.database.AbstractDatabaseConnector.getDialect(AbstractDatabaseConnector.java:167) at org.sonar.commons.database.DriverDatabaseConnector.getEntityManagerFactory(DriverDatabaseConnector.java:111) at org.sonar.commons.database.DriverDatabaseConnector.createEntityManager(DriverDatabaseConnector.java:139) at org.sonar.commons.database.DatabaseSession.start(DatabaseSession.java:55) at org.sonar.commons.database.ThreadLocalDatabaseSessionFactory.getSession(ThreadLocalDatabaseSessionFactory.java:35) at org.sonar.commons.database.DatabaseSessionProvider.provide(DatabaseSessionProvider.java:28) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.picocontainer.injectors.MethodInjector.invokeMethod(MethodInjector.java:137) at org.picocontainer.injectors.MethodInjector.access$000(MethodInjector.java:39) at org.picocontainer.injectors.MethodInjector$2.run(MethodInjector.java:123) at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:289) at org.picocontainer.injectors.MethodInjector.decorateComponentInstance(MethodInjector.java:130) at org.picocontainer.injectors.CompositeInjector.decorateComponentInstance(CompositeInjector.java:59) at org.picocontainer.injectors.Reinjector.reinject(Reinjector.java:99) at org.picocontainer.injectors.ProviderAdapter.getComponentInstance(ProviderAdapter.java:84) at org.picocontainer.DefaultPicoContainer.getInstance(DefaultPicoContainer.java:573) at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:534) at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:546) at org.sonar.mojo.MavenExtensionsContainer.stop(MavenExtensionsContainer.java:91) at org.sonar.mojo.InternalMojo.execute(InternalMojo.java:153) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at org.sonar.mojo.bootstrap.Bootstraper.executeMojo(Bootstraper.java:76) at org.sonar.mojo.bootstrap.Bootstraper.start(Bootstraper.java:62) at org.sonar.mojo.bootstrap.SonarMojo.execute(SonarMojo.java:112) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:553) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:523) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:268) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430) at org.codehaus.classworlds.Launcher.main(Launcher.java:375) ** END NESTED EXCEPTION ** Last packet sent to the server was 0 ms ago. [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 8 seconds [INFO] Finished at: Tue Aug 03 19:01:53 EDT 2010 [INFO] Final Memory: 22M/341M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
