See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1366/>
------------------------------------------ Started by upstream project "Cy3 Session api" build number 963 Checking out http://chianti.ucsd.edu/svn/core3/io-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/io A src/test/java/org/cytoscape/io/read A src/test/java/org/cytoscape/io/read/internal A src/test/java/org/cytoscape/io/read/internal/xgmml A src/test/java/org/cytoscape/io/internal A src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java A src/test/java/org/cytoscape/io/internal/read A src/test/java/org/cytoscape/io/internal/read/ssf A src/test/java/org/cytoscape/io/internal/read/ssf/test A src/test/java/org/cytoscape/io/internal/read/ssf/test/SSFReaderTest.java A src/test/resources A src/test/resources/META-INF A src/test/resources/META-INF/spring A src/test/resources/META-INF/spring/bundle-context.xml A src/test/resources/testData A src/test/resources/testData/SSFTestData A src/test/resources/testData/SSFTestData/ssf_test1.ssf A src/test/resources/testData/SSFTestData/ssf_test2.ssf A src/test/resources/testData/SSFTestData/ssf_test3.ssf A src/test/resources/testData/SSFTestData/ssf_test4.ssf AU src/test/resources/testData/galFiltered.xgmml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/io A src/main/java/org/cytoscape/io/internal A src/main/java/org/cytoscape/io/internal/CyFileFilterImpl.java A src/main/java/org/cytoscape/io/internal/write A src/main/java/org/cytoscape/io/internal/write/gml A src/main/java/org/cytoscape/io/internal/write/gml/GMLWriter.java A src/main/java/org/cytoscape/io/internal/write/graphics A src/main/java/org/cytoscape/io/internal/write/graphics/PDFExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/BitmapExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/Exporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/SVGExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/PSExporter.java A src/main/java/org/cytoscape/io/internal/write/datatable A src/main/java/org/cytoscape/io/internal/write/datatable/CyAttributesWriter.java.asdf A src/main/java/org/cytoscape/io/internal/write/sif A src/main/java/org/cytoscape/io/internal/write/sif/InteractionWriter.java A src/main/java/org/cytoscape/io/internal/write/session A src/main/java/org/cytoscape/io/internal/write/session/CytoscapeSessionWriter.java.asdf A src/main/java/org/cytoscape/io/internal/write/xgmml A src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java A src/main/java/org/cytoscape/io/internal/read A src/main/java/org/cytoscape/io/internal/read/expression A src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java A src/main/java/org/cytoscape/io/internal/read/expression/ExpressionData.java A src/main/java/org/cytoscape/io/internal/read/gml A src/main/java/org/cytoscape/io/internal/read/gml/GMLReader.java A src/main/java/org/cytoscape/io/internal/read/gml/KeyValue.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java A src/main/java/org/cytoscape/io/internal/read/datatable A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/sif A src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java A src/main/java/org/cytoscape/io/internal/read/sif/InteractionsReader.java A src/main/java/org/cytoscape/io/internal/read/session A src/main/java/org/cytoscape/io/internal/read/session/CytoscapeSessionReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/xgmml A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/HandlerFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectTypeMap.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLReader.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataEntries.java A src/main/java/org/cytoscape/io/internal/read/xgmml/RDFTags.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ParseState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/SAXState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/Handler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraph.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroup.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdge.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDF.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java A src/main/java/org/cytoscape/io/internal/read/AbstractDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/CyReaderFactoryImpl.java A src/main/java/org/cytoscape/io/internal/read/CyReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/VisualStyleBuilder.java A src/main/java/org/cytoscape/io/internal/read/ssf A src/main/java/org/cytoscape/io/internal/read/ssf/SSFParser.java A src/main/java/org/cytoscape/io/internal/read/ssf/SSFReader.java A src/main/java/org/cytoscape/io/internal/util A src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java A src/main/java/org/cytoscape/io/internal/util/ReadUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 21276 no change for http://chianti.ucsd.edu/svn/core3/io-impl/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 60874 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 70 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 IO impl/modules/org.cytoscape$io-impl/builds/2010-08-09_21-09-51/archive/org.cytoscape/io-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/read/gml/GMLReader.java>:[566,33] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.CyNetworkView <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLReader.java>:[190,29] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.CyNetworkView <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLReader.java>:[279,28] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLReader.java>:[438,28] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Mon Aug 09 21:10:02 EDT 2010 [INFO] Final Memory: 49M/486M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://localhost:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.io-impl [org.cytoscape.io] Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 60 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 10 seconds [INFO] Finished at: Mon Aug 09 21:10:19 EDT 2010 [INFO] Final Memory: 65M/716M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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