See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/901/>
------------------------------------------ Started by upstream project "Cy3 Layout api" build number 1182 Checking out http://chianti.ucsd.edu/svn/core3/layout-cytoscape-impl/trunk A osgi.bnd A src A src/main A src/main/java A src/main/java/csplugins A src/main/java/csplugins/layout A src/main/java/csplugins/layout/Profile.java A src/main/java/csplugins/layout/algorithms A src/main/java/csplugins/layout/algorithms/GroupAttributesLayout.java.broken A src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java A src/main/java/csplugins/layout/algorithms/circularLayout A src/main/java/csplugins/layout/algorithms/circularLayout/CircularLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/bioLayout A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithm.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithm.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/graphPartition A src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Edge.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 21281 no change for http://chianti.ucsd.edu/svn/core3/layout-cytoscape-impl/trunk since the previous build Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 42802 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] snapshot org.cytoscape:util-intr:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:util-intr:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [pax:compile] [INFO] Compiling 13 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-08-10_14-00-25/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[327,28] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[341,24] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[342,22] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[726,24] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[727,22] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[775,20] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[776,20] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyEdge> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java>:[73,11] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.CyNetworkView <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java>:[152,26] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java>:[164,26] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java>:[220,26] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java>:[231,26] cannot find symbol symbol : method getSource() location: interface org.cytoscape.view.model.View<org.cytoscape.model.CyNode> [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 19 seconds [INFO] Finished at: Tue Aug 10 14:00:47 EDT 2010 [INFO] Final Memory: 45M/485M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://localhost:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.layout-cytoscape-impl [csplugins.layout] Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.layout-cytoscape-impl [csplugins.layout] Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/viewmodel-api/1.0-SNAPSHOT/viewmodel-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [pax:compile] [INFO] Compiling 5 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 14 seconds [INFO] Finished at: Tue Aug 10 14:01:07 EDT 2010 [INFO] Final Memory: 61M/718M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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