See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/1349/changes>
Changes: [kono] First version using row-oriented view model. This is a big change and still need some bug fixes. You can start Cytoscape Desktop, but may not be able to create/load networks. ------------------------------------------ Started by timer Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/core-task-impl/trunk A osgi.bnd A src A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/task A src/main/java/org/cytoscape/task/internal A src/main/java/org/cytoscape/task/internal/select A src/main/java/org/cytoscape/task/internal/select/SelectUtils.java A src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java A src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTask.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/AbstractSelectTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAllTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadDataTableTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable/AbstractLoadDataTableTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadDataTableTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/title A src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTask.java A src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTaskFactory.java A src/main/java/org/cytoscape/task/internal/proxysettings A src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTask.java A src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTaskFactory.java A src/main/java/org/cytoscape/task/internal/tests A src/main/java/org/cytoscape/task/internal/tests/tunables A src/main/java/org/cytoscape/task/internal/tests/tunables/TunablesTestTask.java A src/main/java/org/cytoscape/task/internal/tests/tunables/TunablesTestTaskFactory.java A src/main/java/org/cytoscape/task/internal/destruction A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkViewTask.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkTask.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/session A src/main/java/org/cytoscape/task/internal/session/NewSessionTask.java A src/main/java/org/cytoscape/task/internal/session/OpenSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionTask.java A src/main/java/org/cytoscape/task/internal/session/NewSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/OpenSessionTask.java A src/main/java/org/cytoscape/task/internal/session/AbstractSaveSessionTask.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTask.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesEdgesTask.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesOnlyTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/CreateNetworkViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/CloneNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/NewEmptyNetworkTask.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesOnlyTask.java A src/main/java/org/cytoscape/task/internal/creation/AbstractCreationTask.java A src/main/java/org/cytoscape/task/internal/creation/CreateNetworkViewTask.java A src/main/java/org/cytoscape/task/internal/creation/CloneNetworkTask.java A src/main/java/org/cytoscape/task/internal/creation/NewEmptyNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom A src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitContentTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomInTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/FitContentTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/AbstractZoomTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTask.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomInTask.java A src/main/java/org/cytoscape/task/internal/hide A src/main/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllNodesTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllTask.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideUtils.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedNodesTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkURLTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/AbstractLoadNetworkTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/SetCurrentNetworkTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadInputStreamTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkURLTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/SetCurrentNetworkTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadInputStreamTask.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 21343 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 50467 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.core-task-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 92 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task Implementation/modules/org.cytoscape$core-task-impl/builds/2010-08-11_20-49-08/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesOnlyTask.java>:[121,31] cannot find symbol symbol : method getNetworkView(org.cytoscape.model.subnetwork.CySubNetwork) location: interface org.cytoscape.view.model.CyNetworkViewFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/src/main/java/org/cytoscape/task/internal/loadnetwork/AbstractLoadNetworkTask.java>:[113,14] cannot find symbol symbol : method getNetworkView(org.cytoscape.model.CyNetwork) location: interface org.cytoscape.view.model.CyNetworkViewFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/src/main/java/org/cytoscape/task/internal/creation/CreateNetworkViewTask.java>:[64,27] cannot find symbol symbol : method getNetworkView(org.cytoscape.model.CyNetwork) location: interface org.cytoscape.view.model.CyNetworkViewFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/src/main/java/org/cytoscape/task/internal/creation/NewEmptyNetworkTask.java>:[64,27] cannot find symbol symbol : method getNetworkView(org.cytoscape.model.CyNetwork) location: interface org.cytoscape.view.model.CyNetworkViewFactory [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Wed Aug 11 20:49:16 EDT 2010 [INFO] Final Memory: 44M/491M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://10.20.1.18:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.core-task-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://10.20.1.18:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.core-task-impl Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.core-task-impl Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.core-task-impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 86 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 23 seconds [INFO] Finished at: Wed Aug 11 20:50:15 EDT 2010 [INFO] Final Memory: 62M/728M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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