See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/491/>
------------------------------------------ [...truncated 229 lines...] [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [INFO] repository metadata for: 'snapshot org.cytoscape:cy-commons-cli:1.0-SNAPSHOT' could not be found on repository: snapshots, so will be created Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-20100815.000152-1.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-08-14_20-01-11/archive/org.cytoscape/cy-commons-cli/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-08-14_20-01-11/archive/org.cytoscape/cy-commons-cli/1.0-20100815.000152-1/cy-commons-cli-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-08-14_20-01-11/archive/org.cytoscape/cy-commons-cli/1.0-20100815.000152-1/cy-commons-cli-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-08-14_20-01-11/archive/org.cytoscape/cy-commons-cli/1.0-20100815.000152-1/cy-commons-cli-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error deploying artifact: Failed to transfer file: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-20100815.000152-1.jar. Return code is: 500 [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 39 seconds [INFO] Finished at: Sat Aug 14 20:01:53 EDT 2010 [INFO] Final Memory: 61M/724M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://10.20.1.18:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://10.20.1.18:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.cy-commons-cli Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.cy-commons-cli Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/src/main/resources> [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [findbugs:findbugs] [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using FindBugs Version: 1.3.2 [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Using the xdoc format [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Debugging is Off [INFO] Using bug include filter <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/sonar/findbugs-include.xml> [INFO] No bug exclude filter. [INFO] Printing Errors [INFO] Printing Missing classes [INFO] Printing Source Roots [INFO] org.cytoscape.cy-commons-cli Executing org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [checkstyle:checkstyle] [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! [INFO] There are 28 checkstyle errors. [INFO] org.cytoscape.cy-commons-cli Executing org.apache.maven.plugins:maven-pmd-plugin:[pmd] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd] [INFO] ------------------------------------------------------------------------ [INFO] [pmd:pmd] [INFO] org.cytoscape.cy-commons-cli Executing org.codehaus.mojo:javancss-maven-plugin:[report] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report] [INFO] ------------------------------------------------------------------------ [INFO] [javancss:report] [INFO] org.cytoscape.cy-commons-cli Executing org.codehaus.mojo:cobertura-maven-plugin:[cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cy-commons-cli [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin:2.2:cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/src/main/resources> [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 21 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 21 classes. Instrument time: 1082ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.apache.commons.cli.OptionGroupTest Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.133 sec Running org.apache.commons.cli.TestHelpFormatter Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec Running org.apache.commons.cli.ValuesTest Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec Running org.apache.commons.cli.OptionsTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 sec Running org.apache.commons.cli.ValueTest Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 sec Running org.apache.commons.cli.PatternOptionBuilderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.097 sec Running org.apache.commons.cli.OptionBuilderTest Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec Running org.apache.commons.cli.ParseTest Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec Running org.apache.commons.cli.ArgumentIsOptionTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec Running org.apache.commons.cli.BuildTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec Running org.apache.commons.cli.ApplicationTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec Running org.apache.commons.cli.GnuParseTest Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec Running org.apache.commons.cli.ParseRequiredTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec Results : Tests run: 77, Failures: 0, Errors: 0, Skipped: 0 Exception in thread "Thread-0" java.lang.ExceptionInInitializerError at java.io.File.deleteOnExit(File.java:939) at net.sourceforge.cobertura.util.FileLocker.<init>(FileLocker.java:80) at net.sourceforge.cobertura.coveragedata.ProjectData.saveGlobalProjectData(ProjectData.java:230) at net.sourceforge.cobertura.coveragedata.SaveTimer.run(SaveTimer.java:31) at java.lang.Thread.run(Thread.java:619) Caused by: java.lang.IllegalStateException: Shutdown in progress at java.lang.Shutdown.add(Shutdown.java:62) at java.lang.System$2.registerShutdownHook(System.java:1146) at java.io.DeleteOnExitHook.<clinit>(DeleteOnExitHook.java:20) ... 5 more [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 21 classes. Report time: 515ms [INFO] Cobertura Report generation was successful. [INFO] org.cytoscape.cy-commons-cli Executing org.apache.maven.plugins:maven-surefire-plugin:[] [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.findbugs.FindbugsMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.cpd.CpdMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli Collecting duplications... [INFO] org.cytoscape.cy-commons-cli File suffixes : java [INFO] org.cytoscape.cy-commons-cli Exclusions : {} [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.checkstyle.CheckstyleMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.pmd.PmdMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.core.SaveProfileMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.core.sources.ImportJavaSourcesMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.core.SaveProjectLinksFromPom] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.javancss.JavaNcssMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.cobertura.CoberturaMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/site/cobertura/coverage.xml> [INFO] org.cytoscape.cy-commons-cli [class org.sonar.plugins.surefire.SurefireMavenCollector] executing [INFO] org.cytoscape.cy-commons-cli parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/surefire-reports> [INFO] Trigger server [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 54 seconds [INFO] Finished at: Sat Aug 14 20:03:27 EDT 2010 [INFO] Final Memory: 89M/774M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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