See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/482/>
------------------------------------------ [...truncated 419 lines...] [INFO] Depends timestamp [1281831983000], produces timestamp [1281831999000]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 7 resources [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [findbugs:findbugs] [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using FindBugs Version: 1.3.2 [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Using the xdoc format [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Debugging is Off [INFO] Using bug include filter <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/sonar/findbugs-include.xml> [INFO] No bug exclude filter. [INFO] Printing Errors [INFO] Printing Missing classes [INFO] Printing Source Roots [INFO] org.cytoscape.property Executing org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [checkstyle:checkstyle] [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! [INFO] There are 1 checkstyle errors. [INFO] org.cytoscape.property Executing org.apache.maven.plugins:maven-pmd-plugin:[pmd] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd] [INFO] ------------------------------------------------------------------------ [INFO] [pmd:pmd] [INFO] org.cytoscape.property Executing org.codehaus.mojo:javancss-maven-plugin:[report] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report] [INFO] ------------------------------------------------------------------------ [INFO] [javancss:report] [INFO] org.cytoscape.property Executing org.codehaus.mojo:cobertura-maven-plugin:[cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin:2.2:cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [jaxb2:generate {execution: bookmarks}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime, com.sun.codemodel:codemodel:jar:2.2:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime, com.sun.istack:istack-commons-tools:jar:1.1:runtime, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20061207:runtime, com.sun.xsom:xsom:jar:20081112:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@59d57c39 [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@4eceb042 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd/bookmarks.xsd,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd/xlinks-2001.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Checking up-to-date depends [[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd/bookmarks.xsd,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/src/main/resources/xsd/xlinks-2001.xsd,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/pom.xml]].> [INFO] Checking up-to-date produces [[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/org/cytoscape/property/bookmark/Attribute.java,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/org/cytoscape/property/bookmark/Bookmarks.java,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/org/cytoscape/property/bookmark/Category.java,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/org/cytoscape/property/bookmark/DataSource.java,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-sources/xjc/org/cytoscape/property/bookmark/ObjectFactory.java]].> [INFO] Depends timestamp [1281831983000], produces timestamp [1281831999000]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 7 resources [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 14 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 14 classes. Instrument time: 308ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 1 resource [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.preference.internal.ExampleBeanIntegrationTest 14-Aug-2010 8:28:20 PM org.springframework.test.AbstractSingleSpringContextTests loadContextLocations INFO: Loading context for locations: META-INF/spring/bundle-context.xml 14-Aug-2010 8:28:20 PM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions INFO: Loading XML bean definitions from class path resource [META-INF/spring/bundle-context.xml] 14-Aug-2010 8:28:20 PM org.springframework.context.support.AbstractApplicationContext prepareRefresh INFO: Refreshing org.springframework.context.support.genericapplicationcont...@67e8a1f6: display name [org.springframework.context.support.genericapplicationcont...@67e8a1f6]; startup date [Sat Aug 14 20:28:20 EDT 2010]; root of context hierarchy 14-Aug-2010 8:28:20 PM org.springframework.context.support.AbstractApplicationContext obtainFreshBeanFactory INFO: Bean factory for application context [org.springframework.context.support.genericapplicationcont...@67e8a1f6]: org.springframework.beans.factory.support.defaultlistablebeanfact...@16df1832 14-Aug-2010 8:28:20 PM org.springframework.beans.factory.support.DefaultListableBeanFactory preInstantiateSingletons INFO: Pre-instantiating singletons in org.springframework.beans.factory.support.defaultlistablebeanfact...@16df1832: defining beans [coreProperties,coreCyProp,bookmarkFactory,bookmarks,bookmarksUtil]; root of factory hierarchy 14-Aug-2010 8:28:20 PM org.springframework.core.io.support.PropertiesLoaderSupport loadProperties INFO: Loading properties file from class path resource [cytoscape.props] ============= Testing factory bean ================== Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.577 sec Results : Tests run: 1, Failures: 0, Errors: 0, Skipped: 0 14-Aug-2010 8:28:20 PM org.springframework.context.support.AbstractApplicationContext doClose INFO: Closing org.springframework.context.support.genericapplicationcont...@67e8a1f6: display name [org.springframework.context.support.genericapplicationcont...@67e8a1f6]; startup date [Sat Aug 14 20:28:20 EDT 2010]; root of context hierarchy Exception in thread "Thread-1" java.lang.ExceptionInInitializerError at java.io.File.deleteOnExit(File.java:939) at net.sourceforge.cobertura.util.FileLocker.<init>(FileLocker.java:80) at net.sourceforge.cobertura.coveragedata.ProjectData.saveGlobalProjectData(ProjectData.java:230) at net.sourceforge.cobertura.coveragedata.SaveTimer.run(SaveTimer.java:31) at java.lang.Thread.run(Thread.java:619) Caused by: java.lang.IllegalStateException: Shutdown in progress at java.lang.Shutdown.add(Shutdown.java:62) at java.lang.System$2.registerShutdownHook(System.java:1146) at java.io.DeleteOnExitHook.<clinit>(DeleteOnExitHook.java:20) ... 5 more [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 14 classes. Report time: 201ms [INFO] Cobertura Report generation was successful. [INFO] org.cytoscape.property Executing org.apache.maven.plugins:maven-surefire-plugin:[] [INFO] org.cytoscape.property [class org.sonar.plugins.findbugs.FindbugsMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.cpd.CpdMavenCollector] executing [INFO] org.cytoscape.property Collecting duplications... [INFO] org.cytoscape.property File suffixes : java [INFO] org.cytoscape.property Exclusions : {} [INFO] org.cytoscape.property [class org.sonar.plugins.checkstyle.CheckstyleMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.pmd.PmdMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.core.SaveProfileMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.core.sources.ImportJavaSourcesMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.core.SaveProjectLinksFromPom] executing [INFO] org.cytoscape.property [class org.sonar.plugins.javancss.JavaNcssMavenCollector] executing [INFO] org.cytoscape.property [class org.sonar.plugins.cobertura.CoberturaMavenCollector] executing [INFO] org.cytoscape.property parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/site/cobertura/coverage.xml> [INFO] org.cytoscape.property [class org.sonar.plugins.surefire.SurefireMavenCollector] executing [INFO] org.cytoscape.property parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property/ws/trunk/target/surefire-reports> [INFO] Trigger server [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 36 seconds [INFO] Finished at: Sat Aug 14 20:28:23 EDT 2010 [INFO] Final Memory: 89M/724M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
