See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/14/>
------------------------------------------ [...truncated 555 lines...] A equations/src/main/java/org/cytoscape/equations/EqnParser.java A equations/src/main/java/org/cytoscape/equations/StringList.java A equations/src/main/java/org/cytoscape/equations/Tokeniser.java A equations/src/main/java/org/cytoscape/equations/DoubleList.java A equations/src/main/java/org/cytoscape/equations/CodeAndSourceLocation.java A equations/src/main/java/org/cytoscape/equations/ArgDescriptor.java A equations/src/main/java/org/cytoscape/equations/AbstractFunction.java A equations/src/main/java/org/cytoscape/equations/builtins A equations/src/main/java/org/cytoscape/equations/builtins/Not.java A equations/src/main/java/org/cytoscape/equations/builtins/Sign.java A equations/src/main/java/org/cytoscape/equations/builtins/Largest.java A equations/src/main/java/org/cytoscape/equations/builtins/Sinh.java A equations/src/main/java/org/cytoscape/equations/builtins/And.java A equations/src/main/java/org/cytoscape/equations/builtins/Last.java A equations/src/main/java/org/cytoscape/equations/builtins/Sum.java A equations/src/main/java/org/cytoscape/equations/builtins/Combin.java A equations/src/main/java/org/cytoscape/equations/builtins/Mid.java A equations/src/main/java/org/cytoscape/equations/builtins/Ln.java A equations/src/main/java/org/cytoscape/equations/builtins/Average.java A equations/src/main/java/org/cytoscape/equations/builtins/HarMean.java A equations/src/main/java/org/cytoscape/equations/builtins/GeoMean.java A equations/src/main/java/org/cytoscape/equations/builtins/Permut.java A equations/src/main/java/org/cytoscape/equations/builtins/BList.java A equations/src/main/java/org/cytoscape/equations/builtins/Mod.java A equations/src/main/java/org/cytoscape/equations/builtins/Or.java A equations/src/main/java/org/cytoscape/equations/builtins/Log.java A equations/src/main/java/org/cytoscape/equations/builtins/FList.java A equations/src/main/java/org/cytoscape/equations/builtins/Radians.java A equations/src/main/java/org/cytoscape/equations/builtins/Min.java A equations/src/main/java/org/cytoscape/equations/builtins/Mode.java A equations/src/main/java/org/cytoscape/equations/builtins/Max.java A equations/src/main/java/org/cytoscape/equations/builtins/StDev.java A equations/src/main/java/org/cytoscape/equations/builtins/First.java A equations/src/main/java/org/cytoscape/equations/builtins/Count.java A equations/src/main/java/org/cytoscape/equations/builtins/Sin.java A equations/src/main/java/org/cytoscape/equations/builtins/Sqrt.java A equations/src/main/java/org/cytoscape/equations/builtins/ASin.java A equations/src/main/java/org/cytoscape/equations/builtins/Trunc.java A equations/src/main/java/org/cytoscape/equations/builtins/Exp.java A equations/src/main/java/org/cytoscape/equations/builtins/Median.java A equations/src/main/java/org/cytoscape/equations/builtins/NormDist.java A equations/src/main/java/org/cytoscape/equations/builtins/Now.java A equations/src/main/java/org/cytoscape/equations/builtins/ListToString.java A equations/src/main/java/org/cytoscape/equations/builtins/ATan2.java A equations/src/main/java/org/cytoscape/equations/builtins/Abs.java A equations/src/main/java/org/cytoscape/equations/builtins/Pi.java A equations/src/main/java/org/cytoscape/equations/builtins/Substitute.java A equations/src/main/java/org/cytoscape/equations/builtins/Value.java A equations/src/main/java/org/cytoscape/equations/builtins/Right.java A equations/src/main/java/org/cytoscape/equations/builtins/Len.java A equations/src/main/java/org/cytoscape/equations/builtins/Degrees.java A equations/src/main/java/org/cytoscape/equations/builtins/Product.java A equations/src/main/java/org/cytoscape/equations/builtins/Today.java A equations/src/main/java/org/cytoscape/equations/builtins/Tan.java A equations/src/main/java/org/cytoscape/equations/builtins/IList.java A equations/src/main/java/org/cytoscape/equations/builtins/Cos.java A equations/src/main/java/org/cytoscape/equations/builtins/ACos.java A equations/src/main/java/org/cytoscape/equations/builtins/Round.java A equations/src/main/java/org/cytoscape/equations/builtins/Lower.java A equations/src/main/java/org/cytoscape/equations/builtins/Var.java A equations/src/main/java/org/cytoscape/equations/builtins/Error.java A equations/src/main/java/org/cytoscape/equations/builtins/Nth.java A equations/src/main/java/org/cytoscape/equations/builtins/Left.java A equations/src/main/java/org/cytoscape/equations/builtins/Tanh.java A equations/src/main/java/org/cytoscape/equations/builtins/Upper.java A equations/src/main/java/org/cytoscape/equations/builtins/Cosh.java A equations/src/main/java/org/cytoscape/equations/builtins/If.java A equations/src/main/java/org/cytoscape/equations/builtins/SList.java A equations/src/main/java/org/cytoscape/equations/parse_tree A equations/src/main/java/org/cytoscape/equations/parse_tree/BooleanConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FConvNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/UnaryOpNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FloatConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/Node.java A equations/src/main/java/org/cytoscape/equations/parse_tree/StringConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/IdentNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/BinOpNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FuncCallNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/SConvNode.java A equations/src/main/java/org/cytoscape/equations/BooleanList.java A equations/src/main/java/org/cytoscape/equations/ArgType.java A equations/src/main/java/org/cytoscape/equations/EqnCompiler.java A equations/src/main/java/org/cytoscape/equations/Token.java A equations/src/main/java/org/cytoscape/equations/EqnParserImpl.java A equations/src/main/java/org/cytoscape/equations/FunctionUtil.java A equations/src/main/java/org/cytoscape/equations/EquationUtil.java A equations/src/main/java/org/cytoscape/equations/interpreter A equations/src/main/java/org/cytoscape/equations/interpreter/Instruction.java A equations/src/main/java/org/cytoscape/equations/interpreter/IdentDescriptor.java A equations/src/main/java/org/cytoscape/equations/interpreter/Interpreter.java A equations/src/main/java/org/cytoscape/equations/Function.java A equations/src/main/java/org/cytoscape/equations/Equation.java A equations/src/main/java/org/cytoscape/equations/LongList.java A equations/src/main/java/org/cytoscape/equations/Parser.java A equations/pom.xml A render.immed A render.immed/src A render.immed/src/test A render.immed/src/test/java A render.immed/src/test/java/cytoscape A render.immed/src/test/java/cytoscape/render A render.immed/src/test/java/cytoscape/render/immed A render.immed/src/test/java/cytoscape/render/immed/OldGraphGraphics.java A render.immed/src/test/java/cytoscape/render/immed/GraphGraphicsTest.java A render.immed/src/main A render.immed/src/main/java A render.immed/src/main/java/cytoscape A render.immed/src/main/java/cytoscape/render A render.immed/src/main/java/cytoscape/render/immed AU render.immed/src/main/java/cytoscape/render/immed/EdgeAnchors.java AU render.immed/src/main/java/cytoscape/render/immed/GraphGraphics.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape A render.immed/src/main/java/cytoscape/render/immed/nodeshape/HexagonNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/OctagonNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/DiamondNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/EllipseNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/LegacyCustomNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/NodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/VeeNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/ParallelogramNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/AbstractNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/RectangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/RoundedRectangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/TriangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/arrow A render.immed/src/main/java/cytoscape/render/immed/arrow/DeltaArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/DiamondArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/ArrowheadArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/NoArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/HalfTopArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/TeeArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/Arrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/HalfBottomArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/DiscArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/AbstractArrow.java A render.immed/pom.xml At revision 21390 no change for http://chianti.ucsd.edu/svn/corelibs/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 40177 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] Cytoscape Core Libraries Parent POM [INFO] commons-cli-1-x-cytocape-custom [INFO] equations [INFO] util-intr [INFO] geom-spacial [INFO] geom-rtree [INFO] GINY API [INFO] graph-fixed [INFO] graph-dynamic [INFO] nerius-math-xform [INFO] obo [INFO] phoebe-dnd [INFO] render-immed [INFO] render-export [INFO] render-stateful [INFO] task [INFO] undo-support [INFO] fing [INFO] ding [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Core Libraries Parent POM [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [site:attach-descriptor] [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/ws/trunk/target/pom-transformed.xml> to /home/bturner/.m2/repository/cytoscape/corelibs/parent/2.8.0-SNAPSHOT/parent-2.8.0-SNAPSHOT.pom [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [INFO] repository metadata for: 'snapshot cytoscape.corelibs:parent:2.8.0-SNAPSHOT' could not be found on repository: snapshots, so will be created Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/corelibs/parent/2.8.0-SNAPSHOT/parent-2.8.0-20100815.005348-1.pom [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape 2.X corelibs/modules/cytoscape.corelibs$parent/builds/2010-08-14_20-53-43/archive/cytoscape.corelibs/parent/2.8.0-SNAPSHOT/pom.xml [HUDSON] Archiving /home/bturner/.m2/repository/cytoscape/corelibs/parent/2.8.0-SNAPSHOT/parent-2.8.0-SNAPSHOT.pom to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape 2.X corelibs/modules/cytoscape.corelibs$parent/builds/2010-08-14_20-53-43/archive/cytoscape.corelibs/parent/2.8.0-20100815.005348-1/parent-2.8.0-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error deploying artifact: Failed to transfer file: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/corelibs/parent/2.8.0-SNAPSHOT/parent-2.8.0-20100815.005348-1.pom. Return code is: 500 [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 3 seconds [INFO] Finished at: Sat Aug 14 20:53:49 EDT 2010 [INFO] Final Memory: 23M/344M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://10.20.1.18:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] Cytoscape Core Libraries Parent POM [INFO] commons-cli-1-x-cytocape-custom [INFO] equations [INFO] util-intr [INFO] geom-spacial [INFO] geom-rtree [INFO] GINY API [INFO] graph-fixed [INFO] graph-dynamic [INFO] nerius-math-xform [INFO] obo [INFO] phoebe-dnd [INFO] render-immed [INFO] render-export [INFO] render-stateful [INFO] task [INFO] undo-support [INFO] fing [INFO] ding [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Core Libraries Parent POM [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://10.20.1.18:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] Cytoscape Core Libraries Parent POM Selected quality profile : Cytoscape, language=java [INFO] Cytoscape Core Libraries Parent POM Executing org.apache.maven.plugins:maven-surefire-plugin:[] [INFO] Cytoscape Core Libraries Parent POM [class org.sonar.plugins.cpd.CpdMavenCollector] executing [INFO] Cytoscape Core Libraries Parent POM Collecting duplications... [INFO] Cytoscape Core Libraries Parent POM File suffixes : java [INFO] Cytoscape Core Libraries Parent POM Exclusions : {} [INFO] Cytoscape Core Libraries Parent POM [class org.sonar.plugins.core.SaveProfileMavenCollector] executing [INFO] Cytoscape Core Libraries Parent POM [class org.sonar.plugins.core.SaveProjectLinksFromPom] executing [INFO] Cytoscape Core Libraries Parent POM [class org.sonar.plugins.surefire.SurefireMavenCollector] executing [INFO] Cytoscape Core Libraries Parent POM parsing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/ws/trunk/target/surefire-reports> [INFO] commons-cli-1-x-cytocape-custom Selected quality profile : Cytoscape, language=java [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Findbugs needs sources to be compiled. Please edit pom.xml to set the <outputDirectory> node and build before executing sonar. [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 15 seconds [INFO] Finished at: Sat Aug 14 20:54:45 EDT 2010 [INFO] Final Memory: 19M/340M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
