See <http://cytoscape.wodaklab.org/hudson/job/DnD%20API/577/>
------------------------------------------
[...truncated 78 lines...]
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar:
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT.jar>
to
/home/bturner/.m2/repository/org/cytoscape/dnd-api/1.0-SNAPSHOT/dnd-api-1.0-SNAPSHOT.jar
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT-javadoc.jar>
to
/home/bturner/.m2/repository/org/cytoscape/dnd-api/1.0-SNAPSHOT/dnd-api-1.0-SNAPSHOT-javadoc.jar
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT-sources.jar>
to
/home/bturner/.m2/repository/org/cytoscape/dnd-api/1.0-SNAPSHOT/dnd-api-1.0-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[Fatal Error] repository.xml:3:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
at
com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249)
at
com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284)
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208)
at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347)
at
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324)
at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140)
at
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
at
hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
at
org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
at hudson.maven.agent.Main.launch(Main.java:165)
at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:708)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:652)
at hudson.remoting.UserRequest.perform(UserRequest.java:114)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:270)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:619)
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[INFO] repository metadata for: 'snapshot org.cytoscape:dnd-api:1.0-SNAPSHOT'
could not be found on repository: snapshots, so will be created
Uploading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/dnd-api/1.0-SNAPSHOT/dnd-api-1.0-20100815.010230-1.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/pom.xml> to
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/DnD
API/modules/org.cytoscape$dnd-api/builds/2010-08-14_21-01-47/archive/org.cytoscape/dnd-api/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/DnD
API/modules/org.cytoscape$dnd-api/builds/2010-08-14_21-01-47/archive/org.cytoscape/dnd-api/1.0-20100815.010230-1/dnd-api-1.0-SNAPSHOT.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT-javadoc.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/DnD
API/modules/org.cytoscape$dnd-api/builds/2010-08-14_21-01-47/archive/org.cytoscape/dnd-api/1.0-20100815.010230-1/dnd-api-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/dnd-api-1.0-SNAPSHOT-sources.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/DnD
API/modules/org.cytoscape$dnd-api/builds/2010-08-14_21-01-47/archive/org.cytoscape/dnd-api/1.0-20100815.010230-1/dnd-api-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/dnd-api/1.0-SNAPSHOT/dnd-api-1.0-20100815.010230-1.jar.
Return code is: 500
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 41 seconds
[INFO] Finished at: Sat Aug 14 21:02:30 EDT 2010
[INFO] Final Memory: 58M/724M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar
-Dsonar.jdbc.password=deploysonar
-Dsonar.jdbc.url=jdbc:mysql://10.20.1.18:3306/sonar
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar]
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 1.8
[INFO] [sonar-core:internal]
[INFO] Sonar JDBC URL: jdbc:mysql://10.20.1.18:3306/sonar
[INFO] Sonar JDBC login: sonar
[INFO] Sonar JDBC driver: com.mysql.jdbc.Driver
[INFO] Sonar branch:
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Selected quality profile :
Cytoscape, language=java
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.codehaus.mojo:findbugs-maven-plugin:[findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing findbugs:findbugs
[INFO] [resources:resources]
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources,
i.e. build is platform dependent!
[INFO] Copying 2 resources
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] Setting property: classpath.resource.loader.class =>
'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'.
[INFO] Setting property: velocimacro.messages.on => 'false'.
[INFO] Setting property: resource.loader => 'classpath'.
[INFO] Setting property: resource.manager.logwhenfound => 'false'.
[INFO] **************************************************************
[INFO] Starting Jakarta Velocity v1.4
[INFO] RuntimeInstance initializing.
[INFO] Default Properties File:
org/apache/velocity/runtime/defaults/velocity.properties
[INFO] Default ResourceManager initializing. (class
org.apache.velocity.runtime.resource.ResourceManagerImpl)
[INFO] Resource Loader Instantiated:
org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader
[INFO] ClasspathResourceLoader : initialization starting.
[INFO] ClasspathResourceLoader : initialization complete.
[INFO] ResourceCache : initialized. (class
org.apache.velocity.runtime.resource.ResourceCacheImpl)
[INFO] Default ResourceManager initialization complete.
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach
[INFO] Created: 20 parsers.
[INFO] Velocimacro : initialization starting.
[INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm
[ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any
resource loader.
[INFO] Velocimacro : error using VM library template VM_global_library.vm :
org.apache.velocity.exception.ResourceNotFoundException: Unable to find
resource 'VM_global_library.vm'
[INFO] Velocimacro : VM library template macro registration complete.
[INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates
[INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT
replace previous VM definitions
[INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be
global in scope if allowed.
[INFO] Velocimacro : initialization complete.
[INFO] Velocity successfully started.
[INFO] [findbugs:findbugs]
[INFO] Using maximum effort.
[INFO] Using low threshold.
[INFO] Using FindBugs Version: 1.3.2
[INFO] Using low threshold.
[INFO] Using low threshold.
[INFO] Using the xdoc format
[INFO] Using maximum effort.
[INFO] Using low threshold.
[INFO] Using low threshold.
[INFO] Debugging is Off
[INFO] Using bug include filter
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/sonar/findbugs-include.xml>
[INFO] No bug exclude filter.
[INFO] Printing Errors
[INFO] Printing Missing classes
[INFO] Printing Source Roots
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle]
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment:
[org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle]
[INFO] ------------------------------------------------------------------------
[INFO] Setting property: classpath.resource.loader.class =>
'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'.
[INFO] Setting property: velocimacro.messages.on => 'false'.
[INFO] Setting property: resource.loader => 'classpath'.
[INFO] Setting property: resource.manager.logwhenfound => 'false'.
[INFO] **************************************************************
[INFO] Starting Jakarta Velocity v1.4
[INFO] RuntimeInstance initializing.
[INFO] Default Properties File:
org/apache/velocity/runtime/defaults/velocity.properties
[INFO] Default ResourceManager initializing. (class
org.apache.velocity.runtime.resource.ResourceManagerImpl)
[INFO] Resource Loader Instantiated:
org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader
[INFO] ClasspathResourceLoader : initialization starting.
[INFO] ClasspathResourceLoader : initialization complete.
[INFO] ResourceCache : initialized. (class
org.apache.velocity.runtime.resource.ResourceCacheImpl)
[INFO] Default ResourceManager initialization complete.
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include
[INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach
[INFO] Created: 20 parsers.
[INFO] Velocimacro : initialization starting.
[INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm
[ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any
resource loader.
[INFO] Velocimacro : error using VM library template VM_global_library.vm :
org.apache.velocity.exception.ResourceNotFoundException: Unable to find
resource 'VM_global_library.vm'
[INFO] Velocimacro : VM library template macro registration complete.
[INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates
[INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT
replace previous VM definitions
[INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be
global in scope if allowed.
[INFO] Velocimacro : initialization complete.
[INFO] Velocity successfully started.
[INFO] [checkstyle:checkstyle]
[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e.
build is platform dependent!
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.apache.maven.plugins:maven-pmd-plugin:[pmd]
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd]
[INFO] ------------------------------------------------------------------------
[INFO] [pmd:pmd]
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.codehaus.mojo:javancss-maven-plugin:[report]
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment:
[org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report]
[INFO] ------------------------------------------------------------------------
[INFO] [javancss:report]
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.codehaus.mojo:cobertura-maven-plugin:[cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.dnd-api [org.cytoscape.dnd]
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin:2.2:cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources,
i.e. build is platform dependent!
[INFO] Copying 2 resources
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 1 file to
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 1 classes.
Instrument time: 49ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources,
i.e. build is platform dependent!
[INFO] skip non existing resourceDirectory
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] No sources to compile
[INFO] [surefire:test]
[INFO] No tests to run.
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 1 classes.
Report time: 59ms
[INFO] Cobertura Report generation was successful.
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Executing
org.apache.maven.plugins:maven-surefire-plugin:[]
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.findbugs.FindbugsMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.cpd.CpdMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Collecting duplications...
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] File suffixes : java
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] Exclusions : {}
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.checkstyle.CheckstyleMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.pmd.PmdMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.core.SaveProfileMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.core.sources.ImportJavaSourcesMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.core.SaveProjectLinksFromPom] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.javancss.JavaNcssMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.cobertura.CoberturaMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] parsing
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] [class
org.sonar.plugins.surefire.SurefireMavenCollector] executing
[INFO] org.cytoscape.dnd-api [org.cytoscape.dnd] parsing
<http://cytoscape.wodaklab.org/hudson/job/DnD%20API/ws/trunk/target/surefire-reports>
[INFO] Trigger server
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 34 seconds
[INFO] Finished at: Sat Aug 14 21:03:36 EDT 2010
[INFO] Final Memory: 89M/778M
[INFO] ------------------------------------------------------------------------
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