See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/560/changes>
Changes: [mes] refactored RowSet stuff to be a microlistener and added table unit tests ------------------------------------------ [...truncated 52 lines...] A src/main/java/org/cytoscape/model/events/AboutToRemoveEdgeEvent.java A src/main/java/org/cytoscape/model/events/AbstractColumnEvent.java A src/main/java/org/cytoscape/model/events/RowSetMicroListener.java A src/main/java/org/cytoscape/model/events/SelectedNodesEvent.java A src/main/java/org/cytoscape/model/events/AbstractEdgeListEvent.java A src/main/java/org/cytoscape/model/events/AboutToRemoveEdgeListener.java A src/main/java/org/cytoscape/model/events/ColumnDeletedEvent.java A src/main/java/org/cytoscape/model/events/UnselectedNodesEvent.java A src/main/java/org/cytoscape/model/events/ColumnCreatedEvent.java A src/main/java/org/cytoscape/model/events/SelectedNodesListener.java A src/main/java/org/cytoscape/model/events/AddedEdgeEvent.java A src/main/java/org/cytoscape/model/events/RemovedEdgeEvent.java A src/main/java/org/cytoscape/model/events/AbstractEdgeEvent.java A src/main/java/org/cytoscape/model/events/ColumnDeletedListener.java A src/main/java/org/cytoscape/model/events/UnselectedNodesListener.java A src/main/java/org/cytoscape/model/events/ColumnCreatedListener.java A src/main/java/org/cytoscape/model/events/AddedEdgeListener.java A src/main/java/org/cytoscape/model/events/RemovedEdgeListener.java A src/main/java/org/cytoscape/model/CyDataTableFactory.java A src/main/java/org/cytoscape/model/CyNetwork.java A src/main/java/org/cytoscape/model/GraphObject.java A src/main/java/org/cytoscape/model/CyDataTableUtil.java A src/main/java/org/cytoscape/model/SUIDFactory.java A src/main/java/org/cytoscape/model/CyDataTable.java A src/main/java/org/cytoscape/model/CyNetworkFactory.java A src/main/java/org/cytoscape/model/CyTableManager.java A src/main/javadoc A src/main/javadoc/org A src/main/javadoc/org/cytoscape A src/main/javadoc/org/cytoscape/model A src/main/javadoc/org/cytoscape/model/package.html A src/main/resources A src/main/resources/readme.txt A pom.xml At revision 21418 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 36424 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 48 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/target/classes> [INFO] [resources:testResources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 12 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model api/modules/org.cytoscape$model-api/builds/2010-08-17_19-07-41/archive/org.cytoscape/model-api/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/src/test/java/org/cytoscape/model/AbstractCyDataTableTest.java>:[234,27] cannot find symbol symbol : method getLastMicroListener() location: class org.cytoscape.event.DummyCyEventHelper <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/src/test/java/org/cytoscape/model/AbstractCyDataTableTest.java>:[242,27] cannot find symbol symbol : method getLastAsynchronousEvent() location: class org.cytoscape.event.DummyCyEventHelper <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/src/test/java/org/cytoscape/model/AbstractCyDataTableTest.java>:[251,27] cannot find symbol symbol : method getLastSynchronousEvent() location: class org.cytoscape.event.DummyCyEventHelper [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Tue Aug 17 19:07:50 EDT 2010 [INFO] Final Memory: 47M/492M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://localhost:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.model-api [org.cytoscape.model] Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.model-api [org.cytoscape.model] Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [findbugs:findbugs] [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using FindBugs Version: 1.3.2 [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Using the xdoc format [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Debugging is Off [INFO] Using bug include filter <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/target/sonar/findbugs-include.xml> [INFO] No bug exclude filter. [INFO] Printing Errors [INFO] Printing Missing classes [INFO] Printing Source Roots [INFO] org.cytoscape.model-api [org.cytoscape.model] Executing org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [checkstyle:checkstyle] [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! [INFO] There are 1 checkstyle errors. [INFO] org.cytoscape.model-api [org.cytoscape.model] Executing org.apache.maven.plugins:maven-pmd-plugin:[pmd] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd] [INFO] ------------------------------------------------------------------------ [INFO] [pmd:pmd] [INFO] org.cytoscape.model-api [org.cytoscape.model] Executing org.codehaus.mojo:javancss-maven-plugin:[report] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report] [INFO] ------------------------------------------------------------------------ [INFO] [javancss:report] [INFO] org.cytoscape.model-api [org.cytoscape.model] Executing org.codehaus.mojo:cobertura-maven-plugin:[cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-api [org.cytoscape.model] [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin:2.2:cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 49 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 49 classes. Instrument time: 872ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 3 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20api/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 43 seconds [INFO] Finished at: Tue Aug 17 19:09:15 EDT 2010 [INFO] Final Memory: 92M/774M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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