See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1392/changes>
Changes: [pwang] Rename [pwang] Rename [pwang] Rename [pwang] Refactored [pwang] [pwang] Rename [pwang] Not needed [pwang] Renamed [pwang] Not needed [pwang] Original creation [pwang] Refactored due to the change of API ------------------------------------------ [...truncated 167 lines...] symbol : class CyReaderFactory location: package org.cytoscape.io.read <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[15,28] cannot find symbol symbol : class CyReaderManager location: package org.cytoscape.io.read <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[16,37] cannot find symbol symbol : class AbstractNetworkReader location: package org.cytoscape.io.internal.read <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[17,41] cannot find symbol symbol : class InteractionsReader location: package org.cytoscape.io.internal.read.sif <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[18,43] cannot find symbol symbol : class XGMMLReader location: package org.cytoscape.io.internal.read.xgmml <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[36,9] cannot find symbol symbol : class CyReaderManager location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[38,9] cannot find symbol symbol : class CyReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[39,9] cannot find symbol symbol : class CyReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[46,9] cannot find symbol symbol : class CyReaderFactory location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[52,9] cannot find symbol symbol : class CyReaderFactory location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/read/ssf/test/SSFReaderTest.java>:[12,41] cannot find symbol symbol : class SSFReader location: package org.cytoscape.io.internal.read.ssf <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/read/ssf/test/SSFReaderTest.java>:[27,9] cannot find symbol symbol : class SSFReader location: class org.cytoscape.io.internal.read.ssf.test.SSFReaderTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[62,15] cannot find symbol symbol : class CyReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[63,17] cannot find symbol symbol : class CyReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[65,16] cannot find symbol symbol : class CyReaderFactory location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[66,18] cannot find symbol symbol : class CyReaderFactory location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[74,4] cannot find symbol symbol : class AbstractNetworkReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/BeanIntegrationTest.java>:[75,4] cannot find symbol symbol : class AbstractNetworkReader location: class org.cytoscape.io.internal.BeanIntegrationTest <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/read/ssf/test/SSFReaderTest.java>:[42,15] cannot find symbol symbol : class SSFReader location: class org.cytoscape.io.internal.read.ssf.test.SSFReaderTest [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 8 seconds [INFO] Finished at: Tue Aug 17 21:09:28 EDT 2010 [INFO] Final Memory: 60M/591M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://localhost:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] org.cytoscape.io-impl [org.cytoscape.io] Selected quality profile : Cytoscape, language=java [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [findbugs:findbugs] [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using FindBugs Version: 1.3.2 [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Using the xdoc format [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Debugging is Off [INFO] Using bug include filter <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/findbugs-include.xml> [INFO] No bug exclude filter. [INFO] Printing Errors [INFO] Printing Missing classes [INFO] Printing Source Roots [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [checkstyle:checkstyle] [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! [INFO] There are 38 checkstyle errors. [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.apache.maven.plugins:maven-pmd-plugin:[pmd] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd] [INFO] ------------------------------------------------------------------------ [INFO] [pmd:pmd] [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.codehaus.mojo:javancss-maven-plugin:[report] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report] [INFO] ------------------------------------------------------------------------ [INFO] [javancss:report] [INFO] org.cytoscape.io-impl [org.cytoscape.io] Executing org.codehaus.mojo:cobertura-maven-plugin:[cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin:2.2:cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 72 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 72 classes. Instrument time: 1752ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! [INFO] Copying 6 resources [INFO] [pax:testCompile] [INFO] Compiling 2 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 51 seconds [INFO] Finished at: Tue Aug 17 21:11:01 EDT 2010 [INFO] Final Memory: 100M/804M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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