See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/38/>
------------------------------------------
[...truncated 3726 lines...]
[WARN] Class 'cytoscape/actions/BendSelectedEdgesAction' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/NodeToolTipProp' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/actions/BackgroundColorAction' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/actions/DeselectAllAction' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/view/TreeCellRenderer' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/data/readers/XGMMLParser$handleRDFSource' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/plugin/NotAPluginException' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/EdgeTargetArrowOpacityProp' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/mappings/InterpolatorFactory' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/util/CreditScreen$ScrollingLinesPanel' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/calculators/GenericEdgeSourceArrowCalculator'
is not accessible through the ClassLoader.
[WARN] Class 'cytoscape/data/AttributeSaverState' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/dialogs/ExportBitmapOptionsDialog' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/logger/LoggerDialog' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/actions/SelectAllEdgesAction' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/ontology/GOTerm' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/visual/ui/editors/continuous/GradientEditorPanel$1' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/calculators/GenericNodeFontSizeCalculator' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/GinyEdgeControlDialog$HideOthersAction' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/ui/editors/discrete/CustomGraphicsCellRenderer'
is not accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/EdgeLabelColorProp' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/mappings/DiscreteMapping' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/visual/calculators/GenericEdgeLineTypeCalculator' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/XGMMLParser$handleRDFTitle' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/util/XGMMLFileFilter' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/data/ontology/readers/DBCrossReferenceReader' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/util/CyNetworkNaming' is not accessible through the
ClassLoader.
[WARN] Class
'cytoscape/visual/customgraphic/impl/bitmap/URLImageCustomGraphics' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/util/LinearScaler' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/view/NetworkPanel' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/view/PopupActionListener' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/util/swing/AttributeImportPanel' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/XGMMLParser$handleGroup' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/TextHttpReader' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/NodeLabelColorProp$1' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/EdgeTargetArrowColorProp' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/EdgeLabelWidthProp$1' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/ColorScaleTable$MyTableModel' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/DestroyNetworkAction' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/writers/ObjectType' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/visual/ui/LegendDialog' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/actions/SelectionModeAction$3' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/util/swing/JTreeTable$TreeTableCellRenderer' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/ui/editors/continuous/GradientEditorPanel' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/SelectionModeAction$2' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/actions/SelectionModeAction$1' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/util/ScalingMethod' is not accessible through the
ClassLoader.
[WARN] Class
'cytoscape/dialogs/ExpressionDataPopupTable$MultipleConditionsTableModel' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/properties/EdgeLabelOpacityProp' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/util/ZipUtil' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/data/readers/XGMMLParser$handleRDFDescription' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/DeSelectAllEdgesAction' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/MetadataEntries' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/NestedNetworkReader' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/visual/calculators/GenericEdgeToolTipCalculator' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/strokes/EqualDashStroke' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/readers/CytoscapeSessionReader' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/util/shadegrown/WindowUtilities$1' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/GinyEdgeControlDialog$DeselectAllAction' is
not accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/strokes/VerticalSlashStroke' is not accessible
through the ClassLoader.
[WARN] Class 'cytoscape/data/attr/util/MultiHashMapModel$AttrDefData' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/ui/VizMapperMainPanel$FitLabelListener' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/plugins/PluginManageDialog$13' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/dialogs/plugins/PluginManageDialog$12' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/ArrangeAction$4' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/dialogs/plugins/PluginManageDialog$11' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/ArrangeAction$5' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/dialogs/plugins/PluginManageDialog$10' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/actions/ArrangeAction$2' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/actions/ArrangeAction$3' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/actions/ArrangeAction$1' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/util/SwingWorker$ThreadVar' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/view/InternalFrameComponent' is not accessible through
the ClassLoader.
[WARN] Class 'cytoscape/util/swing/WidestStringComboBoxModel' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/visual/calculators/GenericNodeColorCalculator' is not
accessible through the ClassLoader.
[WARN] Class 'cytoscape/plugin/PluginManager' is not accessible through the
ClassLoader.
[WARN] Class 'cytoscape/actions/LoadNetworkTask' is not accessible through the
ClassLoader.
[INFO] Java bytecode scan done: 1072 ms
[INFO] Squid extraction...
[INFO] Package design analysis...
[INFO] Package design analysis done: 518 ms
[INFO] Squid extraction done: 6019 ms
[INFO] Sensor SquidSensor done: 12576 ms
[INFO] Sensor ProfileSensor...
[INFO] Sensor ProfileSensor done: 24 ms
[INFO] Sensor ProjectLinksSensor...
[INFO] Sensor ProjectLinksSensor done: 4 ms
[INFO] Sensor VersionEventsSensor...
[INFO] Sensor VersionEventsSensor done: 53 ms
[INFO] Sensor Maven dependencies...
[INFO] Sensor Maven dependencies done: 274 ms
[INFO] Execute maven plugin findbugs-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building Cytoscape Application
[INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing findbugs:findbugs
[INFO] [jaxb2:generate {execution: session}]
[INFO] Started execution.
[INFO] JAXB API is loaded from the
[jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!].
[INFO] Detected JAXB API version [2.1].
[INFO]
pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime,
org.codehaus.plexus:plexus-utils:jar:1.1:runtime,
org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime,
com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime,
javax.xml.bind:jaxb-api:jar:2.1:runtime,
javax.xml.stream:stax-api:jar:1.0-2:runtime,
javax.activation:activation:jar:1.1:runtime,
org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime,
com.sun.codemodel:codemodel:jar:2.2:runtime,
com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime,
com.sun.istack:istack-commons-tools:jar:1.1:runtime,
relaxngDatatype:relaxngDatatype:jar:20020414:runtime,
com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime,
org.kohsuke.rngom:rngom:jar:20061207:runtime,
com.sun.xsom:xsom:jar:20081112:runtime]
[INFO] schemaLanguage:null
[INFO]
schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd>
[INFO] schemaIncludes:[Ljava.lang.String;@80e8a06
[INFO] schemaExcludes:null
[INFO]
bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd>
[INFO] bindingIncludes:[Ljava.lang.String;@7287940b
[INFO] bindingExcludes:null
[INFO] disableDefaultExcludes:false
[INFO] catalog:null
[INFO]
catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver
[INFO] generatePackage:cytoscape.generated
[INFO]
generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc>
[INFO] readOnly:false
[INFO] extension:false
[INFO] strict:true
[INFO] writeCode:true
[INFO] verbose:true
[INFO] debug:false
[INFO] args:[]
[INFO] forceRegenerate:true
[INFO] removeOldOutput:false
[INFO] otherDepends:null
[INFO]
episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode>
[INFO] episode:true
[INFO]
classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/classes,>
/home/bturner/.m2/repository/cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/giny/2.8.0-SNAPSHOT/giny-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-immed/2.8.0-SNAPSHOT/render-immed-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-stateful/2.8.0-SNAPSHOT/render-stateful-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/geom-spacial/2.8.0-SNAPSHOT/geom-spacial-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-export/2.8.0-SNAPSHOT/render-export-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/fing/2.8.0-SNAPSHOT/fing-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/phoebe-dnd/2.8.0-SNAPSHOT/phoebe-dnd-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/undo-support/2.8.0-SNAPSHOT/undo-support-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/task/2.8.0-SNAPSHOT/task-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/ding/2.8.0-SNAPSHOT/ding-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/obo/2.8.0-SNAPSHOT/obo-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/commons-lang/commons-lang/2.1/commons-lang-2.1.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/org.swinglabs.swingx/0.9.7/org.swinglabs.swingx-0.9.7.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.shared/7.3/com.l2fprod.common.shared-7.3.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.fontchooser/7.3/com.l2fprod.common.fontchooser-7.3.jar,
/home/bturner/.m2/repository/cytoscape-sun/jhall/1.0/jhall-1.0.jar,
/home/bturner/.m2/repository/com/lowagie/itext/2.0.8/itext-2.0.8.jar,
/home/bturner/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar,
/home/bturner/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar,
/home/bturner/.m2/repository/colt/colt/1.2.0/colt-1.2.0.jar,
/home/bturner/.m2/repository/concurrent/concurrent/1.3.4/concurrent-1.3.4.jar,
/home/bturner/.m2/repository/cytoscape-temp/biojava/1.4/biojava-1.4.jar,
/home/bturner/.m2/repository/org/jdom/jdom/1.1/jdom-1.1.jar,
/home/bturner/.m2/repository/org/swinglabs/swing-layout/1.0.3/swing-layout-1.0.3.jar,
/home/bturner/.m2/repository/com/jgoodies/looks/2.1.4/looks-2.1.4.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-export/2.1.1/freehep-export-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphics2d/2.1.1/freehep-graphics2d-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio/2.1.1/freehep-graphicsio-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-ps/2.1.1/freehep-graphicsio-ps-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-svg/2.1.1/freehep-graphicsio-svg-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-java/2.1.1/freehep-graphicsio-java-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-io/2.0.2/freehep-io-2.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-swing/2.0.3/freehep-swing-2.0.3.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-util/2.0.2/freehep-util-2.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-xml/2.1.1/freehep-xml-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-jas-plotter/2.2/freehep-jas-plotter-2.2.jar,
/home/bturner/.m2/repository/org/apache/lucene/lucene-core/3.0.1/lucene-core-3.0.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/tclib/1.0/tclib-1.0.jar,
/home/bturner/.m2/repository/cytoscape-temp/violinstrings/1.0.2/violinstrings-1.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/install4j/4.0/install4j-4.0.jar,
/home/bturner/.m2/repository/cytoscape-sun/jaxb-api/1.0/jaxb-api-1.0.jar,
/home/bturner/.m2/repository/cytoscape-sun/jaxb-impl/1.0/jaxb-impl-1.0.jar]
[INFO] plugins:null
[INFO] episodes:null
[INFO] xjcPlugins:null
[INFO] episodes:null
[INFO] specVersion:2.1
[INFO] schemaFiles
(calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd/cysession.xsd]>
[INFO] bindingFiles (calculated):[]
[INFO] xjcPluginArtifacts (resolved):[]
[INFO] xjcPluginFiles (resolved):[]
[INFO] xjcPluginURLs (resolved):[]
[INFO] episodeArtifacts (resolved):[]
[INFO] episodeFiles (resolved):[]
[INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'.
Cannot find CatalogManager.properties
Using java.util.ServiceLoader
[INFO] Parsing input schema(s)...
[INFO] Compiling input schema(s)...
[INFO] Writing output to
[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc].>
[INFO] XJC writing: cytoscape/generated/Child.java
[INFO] XJC writing: cytoscape/generated/Cysession.java
[INFO] XJC writing: cytoscape/generated/Cytopanel.java
[INFO] XJC writing: cytoscape/generated/Cytopanels.java
[INFO] XJC writing: cytoscape/generated/Desktop.java
[INFO] XJC writing: cytoscape/generated/DesktopSize.java
[INFO] XJC writing: cytoscape/generated/Edge.java
[INFO] XJC writing: cytoscape/generated/HiddenEdges.java
[INFO] XJC writing: cytoscape/generated/HiddenNodes.java
[INFO] XJC writing: cytoscape/generated/Network.java
[INFO] XJC writing: cytoscape/generated/NetworkFrame.java
[INFO] XJC writing: cytoscape/generated/NetworkFrames.java
[INFO] XJC writing: cytoscape/generated/NetworkTree.java
[INFO] XJC writing: cytoscape/generated/Node.java
[INFO] XJC writing: cytoscape/generated/ObjectFactory.java
[INFO] XJC writing: cytoscape/generated/Ontology.java
[INFO] XJC writing: cytoscape/generated/OntologyServer.java
[INFO] XJC writing: cytoscape/generated/Panel.java
[INFO] XJC writing: cytoscape/generated/Panels.java
[INFO] XJC writing: cytoscape/generated/Parent.java
[INFO] XJC writing: cytoscape/generated/Plugin.java
[INFO] XJC writing: cytoscape/generated/Plugins.java
[INFO] XJC writing: cytoscape/generated/SelectedEdges.java
[INFO] XJC writing: cytoscape/generated/SelectedNodes.java
[INFO] XJC writing: cytoscape/generated/Server.java
[INFO] XJC writing: cytoscape/generated/SessionState.java
[INFO] XJC writing: cytoscape/generated/ViewableNodes.java
[INFO] Finished execution.
[INFO] [jaxb2:generate {execution: bookmarks}]
[INFO] Started execution.
[INFO] JAXB API is loaded from the
[jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!].
[INFO] Detected JAXB API version [2.1].
[INFO]
pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime,
org.codehaus.plexus:plexus-utils:jar:1.1:runtime,
org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime,
com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime,
javax.xml.bind:jaxb-api:jar:2.1:runtime,
javax.xml.stream:stax-api:jar:1.0-2:runtime,
javax.activation:activation:jar:1.1:runtime,
org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime,
com.sun.codemodel:codemodel:jar:2.2:runtime,
com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime,
com.sun.istack:istack-commons-tools:jar:1.1:runtime,
relaxngDatatype:relaxngDatatype:jar:20020414:runtime,
com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime,
org.kohsuke.rngom:rngom:jar:20061207:runtime,
com.sun.xsom:xsom:jar:20081112:runtime]
[INFO] schemaLanguage:null
[INFO]
schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd>
[INFO] schemaIncludes:[Ljava.lang.String;@48c98900
[INFO] schemaExcludes:null
[INFO]
bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd>
[INFO] bindingIncludes:[Ljava.lang.String;@27418455
[INFO] bindingExcludes:null
[INFO] disableDefaultExcludes:false
[INFO] catalog:null
[INFO]
catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver
[INFO] generatePackage:cytoscape.bookmarks
[INFO]
generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc>
[INFO] readOnly:false
[INFO] extension:false
[INFO] strict:true
[INFO] writeCode:true
[INFO] verbose:true
[INFO] debug:false
[INFO] args:[]
[INFO] forceRegenerate:true
[INFO] removeOldOutput:false
[INFO] otherDepends:null
[INFO]
episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode>
[INFO] episode:true
[INFO]
classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/classes,>
/home/bturner/.m2/repository/cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/giny/2.8.0-SNAPSHOT/giny-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-immed/2.8.0-SNAPSHOT/render-immed-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-stateful/2.8.0-SNAPSHOT/render-stateful-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/geom-spacial/2.8.0-SNAPSHOT/geom-spacial-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/render-export/2.8.0-SNAPSHOT/render-export-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/fing/2.8.0-SNAPSHOT/fing-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/phoebe-dnd/2.8.0-SNAPSHOT/phoebe-dnd-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/undo-support/2.8.0-SNAPSHOT/undo-support-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/task/2.8.0-SNAPSHOT/task-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/ding/2.8.0-SNAPSHOT/ding-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/obo/2.8.0-SNAPSHOT/obo-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar,
/home/bturner/.m2/repository/commons-lang/commons-lang/2.1/commons-lang-2.1.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/org.swinglabs.swingx/0.9.7/org.swinglabs.swingx-0.9.7.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.shared/7.3/com.l2fprod.common.shared-7.3.jar,
/home/bturner/.m2/repository/org/cytoscape/wrappers/com.l2fprod.common.fontchooser/7.3/com.l2fprod.common.fontchooser-7.3.jar,
/home/bturner/.m2/repository/cytoscape-sun/jhall/1.0/jhall-1.0.jar,
/home/bturner/.m2/repository/com/lowagie/itext/2.0.8/itext-2.0.8.jar,
/home/bturner/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar,
/home/bturner/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar,
/home/bturner/.m2/repository/colt/colt/1.2.0/colt-1.2.0.jar,
/home/bturner/.m2/repository/concurrent/concurrent/1.3.4/concurrent-1.3.4.jar,
/home/bturner/.m2/repository/cytoscape-temp/biojava/1.4/biojava-1.4.jar,
/home/bturner/.m2/repository/org/jdom/jdom/1.1/jdom-1.1.jar,
/home/bturner/.m2/repository/org/swinglabs/swing-layout/1.0.3/swing-layout-1.0.3.jar,
/home/bturner/.m2/repository/com/jgoodies/looks/2.1.4/looks-2.1.4.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-export/2.1.1/freehep-export-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphics2d/2.1.1/freehep-graphics2d-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio/2.1.1/freehep-graphicsio-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-ps/2.1.1/freehep-graphicsio-ps-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-svg/2.1.1/freehep-graphicsio-svg-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-graphicsio-java/2.1.1/freehep-graphicsio-java-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-io/2.0.2/freehep-io-2.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-swing/2.0.3/freehep-swing-2.0.3.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-util/2.0.2/freehep-util-2.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-xml/2.1.1/freehep-xml-2.1.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/freehep-jas-plotter/2.2/freehep-jas-plotter-2.2.jar,
/home/bturner/.m2/repository/org/apache/lucene/lucene-core/3.0.1/lucene-core-3.0.1.jar,
/home/bturner/.m2/repository/cytoscape-temp/tclib/1.0/tclib-1.0.jar,
/home/bturner/.m2/repository/cytoscape-temp/violinstrings/1.0.2/violinstrings-1.0.2.jar,
/home/bturner/.m2/repository/cytoscape-temp/install4j/4.0/install4j-4.0.jar,
/home/bturner/.m2/repository/cytoscape-sun/jaxb-api/1.0/jaxb-api-1.0.jar,
/home/bturner/.m2/repository/cytoscape-sun/jaxb-impl/1.0/jaxb-impl-1.0.jar]
[INFO] plugins:null
[INFO] episodes:null
[INFO] xjcPlugins:null
[INFO] episodes:null
[INFO] specVersion:2.1
[INFO] schemaFiles
(calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/resources/xsd/bookmarks.xsd]>
[INFO] bindingFiles (calculated):[]
[INFO] xjcPluginArtifacts (resolved):[]
[INFO] xjcPluginFiles (resolved):[]
[INFO] xjcPluginURLs (resolved):[]
[INFO] episodeArtifacts (resolved):[]
[INFO] episodeFiles (resolved):[]
[INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'.
Using java.util.ServiceLoader
[INFO] Parsing input schema(s)...
[INFO] Compiling input schema(s)...
[INFO] Writing output to
[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/generated-sources/xjc].>
[INFO] XJC writing: cytoscape/bookmarks/Attribute.java
[INFO] XJC writing: cytoscape/bookmarks/Bookmarks.java
[INFO] XJC writing: cytoscape/bookmarks/Category.java
[INFO] XJC writing: cytoscape/bookmarks/DataSource.java
[INFO] XJC writing: cytoscape/bookmarks/ObjectFactory.java
[INFO] Finished execution.
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] Copying 0 resource
[INFO] Copying 1 resource
[INFO] Copying 0 resource
[INFO] Copying 1 resource
[INFO] [compiler:compile]
[INFO] Compiling 570 source files to
<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/classes>
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Can not execute Sonar
Embedded error: Unable to execute maven plugin
Compilation failure
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 47 seconds
[INFO] Finished at: Mon Aug 23 20:47:23 EDT 2010
[INFO] Final Memory: 92M/706M
[INFO] ------------------------------------------------------------------------
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.