See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/40/changes>
Changes: [ruschein] Fixed a Windows regex pattern problem. ------------------------------------------ <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/pom.xml> deploy [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] artifact org.jvnet.jaxb2.maven2:maven-jaxb2-plugin: checking for updates from maven2-repository.dev.java.net [INFO] artifact org.jvnet.jaxb2.maven2:maven-jaxb2-plugin: checking for updates from maven-repository.dev.java.net [INFO] [jaxb2:generate {execution: session}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime, com.sun.codemodel:codemodel:jar:2.2:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime, com.sun.istack:istack-commons-tools:jar:1.1:runtime, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20061207:runtime, com.sun.xsom:xsom:jar:20081112:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@13f62649 [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@54b8cdc [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:cytoscape.generated [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd/cysession.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Cannot find CatalogManager.properties Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc].> [INFO] XJC writing: cytoscape/generated/Child.java [INFO] XJC writing: cytoscape/generated/Cysession.java [INFO] XJC writing: cytoscape/generated/Cytopanel.java [INFO] XJC writing: cytoscape/generated/Cytopanels.java [INFO] XJC writing: cytoscape/generated/Desktop.java [INFO] XJC writing: cytoscape/generated/DesktopSize.java [INFO] XJC writing: cytoscape/generated/Edge.java [INFO] XJC writing: cytoscape/generated/HiddenEdges.java [INFO] XJC writing: cytoscape/generated/HiddenNodes.java [INFO] XJC writing: cytoscape/generated/Network.java [INFO] XJC writing: cytoscape/generated/NetworkFrame.java [INFO] XJC writing: cytoscape/generated/NetworkFrames.java [INFO] XJC writing: cytoscape/generated/NetworkTree.java [INFO] XJC writing: cytoscape/generated/Node.java [INFO] XJC writing: cytoscape/generated/ObjectFactory.java [INFO] XJC writing: cytoscape/generated/Ontology.java [INFO] XJC writing: cytoscape/generated/OntologyServer.java [INFO] XJC writing: cytoscape/generated/Panel.java [INFO] XJC writing: cytoscape/generated/Panels.java [INFO] XJC writing: cytoscape/generated/Parent.java [INFO] XJC writing: cytoscape/generated/Plugin.java [INFO] XJC writing: cytoscape/generated/Plugins.java [INFO] XJC writing: cytoscape/generated/SelectedEdges.java [INFO] XJC writing: cytoscape/generated/SelectedNodes.java [INFO] XJC writing: cytoscape/generated/Server.java [INFO] XJC writing: cytoscape/generated/SessionState.java [INFO] XJC writing: cytoscape/generated/ViewableNodes.java [INFO] Finished execution. [INFO] [jaxb2:generate {execution: bookmarks}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime, com.sun.codemodel:codemodel:jar:2.2:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime, com.sun.istack:istack-commons-tools:jar:1.1:runtime, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20061207:runtime, com.sun.xsom:xsom:jar:20081112:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@658a7b6c [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@66ad2388 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:cytoscape.bookmarks [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/resources/xsd/bookmarks.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/generated-sources/xjc].> [INFO] XJC writing: cytoscape/bookmarks/Attribute.java [INFO] XJC writing: cytoscape/bookmarks/Bookmarks.java [INFO] XJC writing: cytoscape/bookmarks/Category.java [INFO] XJC writing: cytoscape/bookmarks/DataSource.java [INFO] XJC writing: cytoscape/bookmarks/ObjectFactory.java [INFO] Finished execution. [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] snapshot cytoscape.corelibs:util-intr:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:parent:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:graph-dynamic:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:graph-fixed:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:giny:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:render-immed:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:render-stateful:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:geom-spacial:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:render-export:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:fing:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:phoebe-dnd:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:geom-rtree:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:undo-support:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:equations:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:task:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:ding:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:obo:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot cytoscape.corelibs:commons-cli-1-x-cytocape-custom:2.8.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:parent:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] [compiler:compile] [INFO] Compiling 752 source files to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/target/classes> [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$application/builds/2010-08-25_12-03-00/archive/cytoscape/application/2.8.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/java/cytoscape/groups/CyGroupImpl.java>:[619,9] removeNode(int,boolean) in cytoscape.CyNetwork cannot be applied to (cytoscape.CyNode,boolean) <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/java/cytoscape/command/CyCommandManager.java>:[100,9] cannot find symbol symbol : method reserveNamespace(java.lang.String,double,double) location: class cytoscape.command.CyCommandManager <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/cytoscape$application/ws/src/main/java/cytoscape/groups/CyGroupManager.java>:[427,3] cannot find symbol symbol : class RootGraph location: class cytoscape.groups.CyGroupManager [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 35 seconds [INFO] Finished at: Wed Aug 25 12:03:38 EDT 2010 [INFO] Final Memory: 53M/521M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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