See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1459/>
------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/io-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/io A src/test/java/org/cytoscape/io/internal A src/test/java/org/cytoscape/io/internal/read A src/test/java/org/cytoscape/io/internal/read/datatable A src/test/java/org/cytoscape/io/internal/read/datatable/TextDataTableReaderTest.java A src/test/java/org/cytoscape/io/internal/read/sif A src/test/java/org/cytoscape/io/internal/read/sif/InteractionTest.java A src/test/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderTest.java A src/test/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderTester.java A src/test/java/org/cytoscape/io/internal/read/xgmml A src/test/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderTest.java A src/test/resources A src/test/resources/META-INF A src/test/resources/META-INF/spring A src/test/resources/META-INF/spring/bundle-context.xml A src/test/resources/testData A src/test/resources/testData/datatable A src/test/resources/testData/datatable/table_space.txt A src/test/resources/testData/datatable/table_comma.txt A src/test/resources/testData/datatable/blank_delimiter.txt A src/test/resources/testData/datatable/table_tab.txt A src/test/resources/testData/sif A src/test/resources/testData/sif/sample.sif A src/test/resources/testData/sif/degenerate.sif A src/test/resources/testData/sif/multiWordProteinsFileTrailingSpaces.sif A src/test/resources/testData/sif/multiWordProteins.sif A src/test/resources/testData/xgmml AU src/test/resources/testData/xgmml/galFiltered.xgmml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/io A src/main/java/org/cytoscape/io/internal A src/main/java/org/cytoscape/io/internal/CyFileFilterImpl.java A src/main/java/org/cytoscape/io/internal/write A src/main/java/org/cytoscape/io/internal/write/gml A src/main/java/org/cytoscape/io/internal/write/gml/GMLWriter.javax A src/main/java/org/cytoscape/io/internal/write/graphics A src/main/java/org/cytoscape/io/internal/write/graphics/PDFExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/BitmapExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/Exporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/SVGExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/PSExporter.java A src/main/java/org/cytoscape/io/internal/write/datatable A src/main/java/org/cytoscape/io/internal/write/datatable/CyAttributesWriter.java.asdf A src/main/java/org/cytoscape/io/internal/write/sif A src/main/java/org/cytoscape/io/internal/write/sif/InteractionWriter.java A src/main/java/org/cytoscape/io/internal/write/session A src/main/java/org/cytoscape/io/internal/write/session/CytoscapeSessionWriter.java.asdf A src/main/java/org/cytoscape/io/internal/write/xgmml A src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.javax A src/main/java/org/cytoscape/io/internal/read A src/main/java/org/cytoscape/io/internal/read/expression A src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java A src/main/java/org/cytoscape/io/internal/read/expression/ExpressionData.java A src/main/java/org/cytoscape/io/internal/read/gml A src/main/java/org/cytoscape/io/internal/read/gml/KeyValue.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLReader.javax A src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java A src/main/java/org/cytoscape/io/internal/read/AbstractDataTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/datatable A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/sif A src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/session A src/main/java/org/cytoscape/io/internal/read/session/CytoscapeSessionReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/xgmml A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/HandlerFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectTypeMap.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataEntries.java A src/main/java/org/cytoscape/io/internal/read/xgmml/RDFTags.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ParseState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/SAXState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/xgmml/Handler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraph.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroup.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdge.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDF.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java A src/main/java/org/cytoscape/io/internal/read/AbstractDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/VisualStyleBuilder.java A src/main/java/org/cytoscape/io/internal/read/CyDataTableReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/util A src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java A src/main/java/org/cytoscape/io/internal/util/ReadUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 21651 no revision recorded for http://chianti.ucsd.edu/svn/core3/io-impl/trunk in the previous build No emails were triggered. Parsing POMs ERROR: Failed to parse POMs java.io.IOException: Cannot run program "env": java.io.IOException: error=24, Too many open files at java.lang.ProcessBuilder.start(ProcessBuilder.java:460) at java.lang.Runtime.exec(Runtime.java:593) at java.lang.Runtime.exec(Runtime.java:431) at java.lang.Runtime.exec(Runtime.java:328) at org.codehaus.plexus.util.cli.CommandLineUtils.getSystemEnvVars(CommandLineUtils.java:250) at org.codehaus.plexus.util.cli.CommandLineUtils.getSystemEnvVars(CommandLineUtils.java:216) at org.apache.maven.project.interpolation.RegexBasedModelInterpolator.<init>(RegexBasedModelInterpolator.java:63) at sun.reflect.GeneratedConstructorAccessor164.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at org.codehaus.plexus.component.factory.java.JavaComponentFactory.newInstance(JavaComponentFactory.java:44) at org.codehaus.plexus.DefaultPlexusContainer.createComponentInstance(DefaultPlexusContainer.java:1464) at org.codehaus.plexus.component.manager.AbstractComponentManager.createComponentInstance(AbstractComponentManager.java:93) at org.codehaus.plexus.component.manager.ClassicSingletonComponentManager.getComponent(ClassicSingletonComponentManager.java:92) at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:331) at org.codehaus.plexus.component.composition.FieldComponentComposer.assignRequirementToField(FieldComponentComposer.java:129) at org.codehaus.plexus.component.composition.FieldComponentComposer.assembleComponent(FieldComponentComposer.java:73) at org.codehaus.plexus.component.composition.DefaultComponentComposerManager.assembleComponent(DefaultComponentComposerManager.java:68) at org.codehaus.plexus.DefaultPlexusContainer.composeComponent(DefaultPlexusContainer.java:1486) at org.codehaus.plexus.personality.plexus.lifecycle.phase.CompositionPhase.execute(CompositionPhase.java:29) at org.codehaus.plexus.lifecycle.AbstractLifecycleHandler.start(AbstractLifecycleHandler.java:101) at org.codehaus.plexus.component.manager.AbstractComponentManager.startComponentLifecycle(AbstractComponentManager.java:105) at org.codehaus.plexus.component.manager.AbstractComponentManager.createComponentInstance(AbstractComponentManager.java:95) at org.codehaus.plexus.component.manager.ClassicSingletonComponentManager.getComponent(ClassicSingletonComponentManager.java:92) at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:331) at org.codehaus.plexus.embed.Embedder.lookup(Embedder.java:78) at hudson.maven.MavenEmbedder.start(MavenEmbedder.java:695) at hudson.maven.MavenUtil.createEmbedder(MavenUtil.java:181) at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:880) at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:806) at hudson.FilePath.act(FilePath.java:753) at hudson.FilePath.act(FilePath.java:735) at hudson.maven.MavenModuleSetBuild$RunnerImpl.parsePoms(MavenModuleSetBuild.java:546) at hudson.maven.MavenModuleSetBuild$RunnerImpl.doRun(MavenModuleSetBuild.java:432) at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:416) at hudson.model.Run.run(Run.java:1258) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:318) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:129) Caused by: java.io.IOException: java.io.IOException: error=24, Too many open files at java.lang.UNIXProcess.<init>(UNIXProcess.java:148) at java.lang.ProcessImpl.start(ProcessImpl.java:65) at java.lang.ProcessBuilder.start(ProcessBuilder.java:453) ... 40 more [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true FATAL: command execution failed java.io.IOException: Cannot run program "/R1/tools/maven/apache-maven-2.1.0/bin/mvn" (in directory "<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk";)>: java.io.IOException: error=24, Too many open files at java.lang.ProcessBuilder.start(ProcessBuilder.java:460) at hudson.Proc$LocalProc.<init>(Proc.java:192) at hudson.Proc$LocalProc.<init>(Proc.java:164) at hudson.Launcher$LocalLauncher.launch(Launcher.java:638) at hudson.Launcher.launch(Launcher.java:446) at hudson.Launcher.launch(Launcher.java:378) at hudson.Launcher.launch(Launcher.java:312) at hudson.plugins.sonar.SonarPublisher.executeSonar(SonarPublisher.java:145) at hudson.plugins.sonar.SonarPublisher.perform(SonarPublisher.java:111) at hudson.tasks.BuildStepMonitor$3.perform(BuildStepMonitor.java:36) at hudson.model.AbstractBuild$AbstractRunner.perform(AbstractBuild.java:601) at hudson.model.AbstractBuild$AbstractRunner.performAllBuildSteps(AbstractBuild.java:580) at hudson.maven.MavenModuleSetBuild$RunnerImpl.post2(MavenModuleSetBuild.java:610) at hudson.model.AbstractBuild$AbstractRunner.post(AbstractBuild.java:528) at hudson.model.Run.run(Run.java:1281) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:318) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:129) Caused by: java.io.IOException: java.io.IOException: error=24, Too many open files at java.lang.UNIXProcess.<init>(UNIXProcess.java:148) at java.lang.ProcessImpl.start(ProcessImpl.java:65) at java.lang.ProcessBuilder.start(ProcessBuilder.java:453) ... 17 more -- You received this message because you are 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