See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/1747/changes>

Changes:

[ruschein] Merged AbstractTask and IteratorAwareTask.

------------------------------------------
Started by an SCM change
Checking out http://chianti.ucsd.edu/svn/core3/work-api/trunk
A         osgi.bnd
A         src
A         src/test
A         src/test/java
A         src/test/java/org
A         src/test/java/org/cytoscape
A         src/test/java/org/cytoscape/work
A         src/test/java/org/cytoscape/work/SuperTaskTest.java
A         src/test/java/org/cytoscape/work/undo
A         src/test/java/org/cytoscape/work/undo/AbstractUndoableEditTest.java
A         src/test/java/org/cytoscape/work/undo/SimpleUndoableEditTest.java
A         src/test/java/org/cytoscape/work/AbstractTaskTest.java
A         src/test/java/org/cytoscape/work/TunableHandlerTest.java
A         src/test/java/org/cytoscape/work/ProvidesGUIExample.java
A         src/test/java/org/cytoscape/work/TaskIteratorTest.java
A         src/test/java/org/cytoscape/work/AbstractTunableInterceptorTest.java
A         src/test/java/org/cytoscape/work/HasAnnotatedField.java
A         src/test/java/org/cytoscape/work/util
A         src/test/java/org/cytoscape/work/util/BoundedLongTest.java
A         src/test/java/org/cytoscape/work/util/ListSingleSelectionTest.java
A         src/test/java/org/cytoscape/work/util/BoundedFloatTest.java
A         src/test/java/org/cytoscape/work/util/BoundedDoubleTest.java
A         src/test/java/org/cytoscape/work/util/ListMultipleSelectionTest.java
A         src/test/java/org/cytoscape/work/util/BoundedIntegerTest.java
A         src/main
A         src/main/java
A         src/main/java/org
A         src/main/java/org/cytoscape
A         src/main/java/org/cytoscape/work
A         src/main/java/org/cytoscape/work/TunableValidator.java
A         src/main/java/org/cytoscape/work/ProvidesGUI.java
A         src/main/java/org/cytoscape/work/Task.java
A         src/main/java/org/cytoscape/work/HandlerFactory.java
A         src/main/java/org/cytoscape/work/TunableInterceptor.java
A         src/main/java/org/cytoscape/work/TaskMonitor.java
A         src/main/java/org/cytoscape/work/TaskIterator.java
A         src/main/java/org/cytoscape/work/AbstractTunableHandler.java
A         src/main/java/org/cytoscape/work/SuperTask.java
A         src/main/java/org/cytoscape/work/undo
A         src/main/java/org/cytoscape/work/undo/UndoSupport.java
A         src/main/java/org/cytoscape/work/undo/AbstractUndoableEdit.java
A         src/main/java/org/cytoscape/work/AbstractTask.java
A         src/main/java/org/cytoscape/work/TunableHandler.java
A         src/main/java/org/cytoscape/work/Tunable.java
A         src/main/java/org/cytoscape/work/TaskFactory.java
A         src/main/java/org/cytoscape/work/TaskManager.java
A         src/main/java/org/cytoscape/work/AbstractTunableInterceptor.java
A         src/main/java/org/cytoscape/work/util
A         src/main/java/org/cytoscape/work/util/BoundedLong.java
A         src/main/java/org/cytoscape/work/util/ListSelection.java
A         src/main/java/org/cytoscape/work/util/ListSingleSelection.java
A         src/main/java/org/cytoscape/work/util/AbstractBounded.java
A         src/main/java/org/cytoscape/work/util/BoundedFloat.java
A         src/main/java/org/cytoscape/work/util/BoundedDouble.java
A         src/main/java/org/cytoscape/work/util/ListMultipleSelection.java
A         src/main/java/org/cytoscape/work/util/BoundedInteger.java
A         pom.xml
At revision 21722
No emails were triggered.
Parsing POMs
[trunk] $ java -cp 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar
 hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 
/R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar
 37473 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar
<===[HUDSON REMOTING CAPACITY]===>   channel started
Executing Maven:  -B -f 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/pom.xml> 
deploy
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.work-api
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/main/resources>
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Compiling 25 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/classes>
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] Compiling 15 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/test-classes>
[INFO] [recovering meta-data]
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/pom.xml> to 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work 
api/modules/org.cytoscape$work-api/builds/2010-09-07_14-05-00/archive/org.cytoscape/work-api/1.0-SNAPSHOT/pom.xml
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Compilation failure

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/AbstractTunableInterceptorTest.java>:[46,9]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.AbstractTunableInterceptorTest

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/TunableHandlerTest.java>:[42,15]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.TunableHandlerTest

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/AbstractTunableInterceptorTest.java>:[54,43]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.AbstractTunableInterceptorTest

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/TunableHandlerTest.java>:[42,91]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.TunableHandlerTest

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/TunableHandlerTest.java>:[52,30]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.TunableHandlerTest

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/java/org/cytoscape/work/TunableHandlerTest.java>:[53,30]
 cannot find symbol
symbol  : class HasAnnotatedSetterAndGetterMethods
location: class org.cytoscape.work.TunableHandlerTest


[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7 seconds
[INFO] Finished at: Tue Sep 07 14:05:09 EDT 2010
[INFO] Final Memory: 51M/602M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.work-api
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.2
[INFO] [sonar-core:internal]
[INFO]  Database dialect class org.sonar.api.database.dialect.MySql
[INFO]  -------------  Analyzing org.cytoscape.work-api
[INFO]  Selected quality profile : Cytoscape, language=java
[INFO]  Configure maven plugins...
[INFO]  Sensor JavaSourceImporter...
[INFO]  Sensor JavaSourceImporter done: 2490 ms
[INFO]  Sensor AsynchronousMeasuresSensor...
[INFO]  Sensor AsynchronousMeasuresSensor done: 76 ms
[INFO]  Sensor SquidSensor...
[INFO]  Java AST scan...
[INFO]  Java AST scan done: 1236 ms
[INFO]  Java bytecode scan...
[WARN]  Class '[Lorg/cytoscape/work/Tunable$Param;' is not accessible through 
the ClassLoader.
[INFO]  Java bytecode scan done: 106 ms
[INFO]  Squid extraction...
[INFO]  Package design analysis...
[INFO]  Package design analysis done: 9 ms
[INFO]  Squid extraction done: 443 ms
[INFO]  Sensor SquidSensor done: 1849 ms
[INFO]  Sensor ProfileSensor...
[INFO]  Sensor ProfileSensor done: 25 ms
[INFO]  Sensor ProjectLinksSensor...
[INFO]  Sensor ProjectLinksSensor done: 7 ms
[INFO]  Sensor VersionEventsSensor...
[INFO]  Sensor VersionEventsSensor done: 51 ms
[INFO]  Sensor Maven dependencies...
[INFO]  Sensor Maven dependencies done: 61 ms
[INFO]  Execute maven plugin findbugs-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.work-api
[INFO]    task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing findbugs:findbugs
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/main/resources>
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [findbugs:findbugs]
[INFO] Locale is en
     [java] Warnings generated: 7
[INFO]  Execute maven plugin findbugs-maven-plugin done: 12201 ms
[INFO]  Sensor FindbugsSensor...
[INFO]  Sensor FindbugsSensor done: 187 ms
[INFO]  Sensor CheckstyleSensor...
[INFO]  Execute Checkstyle 5.1...
[INFO]  Checkstyle output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/sonar/checkstyle-result.xml>
[INFO]  Checkstyle configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/sonar/checkstyle.xml>
[INFO]  Execute Checkstyle 5.1 done: 697 ms
[INFO]  Sensor CheckstyleSensor done: 789 ms
[INFO]  Sensor PmdSensor...
[INFO]  Execute PMD 4.2.5...
[INFO]  Java version: 1.6
[INFO]  PMD configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/sonar/pmd.xml>
[INFO]  PMD output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/sonar/pmd-result.xml>
[INFO]  Execute PMD 4.2.5 done: 1697 ms
[INFO]  Sensor PmdSensor done: 1785 ms
[INFO]  Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.work-api
[INFO]    task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/main/resources>
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 27 files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 27 classes.
Instrument time: 635ms

[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] Compiling 15 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20api/ws/trunk/target/test-classes>
[INFO] [recovering meta-data]
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Can not execute Sonar

Embedded error: Unable to execute maven plugin
Compilation failure
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 29 seconds
[INFO] Finished at: Tue Sep 07 14:05:49 EDT 2010
[INFO] Final Memory: 81M/723M
[INFO] ------------------------------------------------------------------------

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