See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/51/>
------------------------------------------ [...truncated 798 lines...] A equations/src/test/java/org/cytoscape/equations/builtins/SinTest.java A equations/src/test/java/org/cytoscape/equations/builtins/SqrtTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ASinTest.java A equations/src/test/java/org/cytoscape/equations/builtins/TruncTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ExpTest.java A equations/src/test/java/org/cytoscape/equations/builtins/MedianTest.java A equations/src/test/java/org/cytoscape/equations/builtins/NormDistTest.java A equations/src/test/java/org/cytoscape/equations/builtins/NowTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ListToStringTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ATan2Test.java A equations/src/test/java/org/cytoscape/equations/builtins/AbsTest.java A equations/src/test/java/org/cytoscape/equations/builtins/SubstituteTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ValueTest.java A equations/src/test/java/org/cytoscape/equations/builtins/RightTest.java A equations/src/test/java/org/cytoscape/equations/builtins/LenTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ProductTest.java A equations/src/test/java/org/cytoscape/equations/builtins/TodayTest.java A equations/src/test/java/org/cytoscape/equations/builtins/TanTest.java A equations/src/test/java/org/cytoscape/equations/builtins/IListTest.java A equations/src/test/java/org/cytoscape/equations/builtins/CosTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ACosTest.java A equations/src/test/java/org/cytoscape/equations/builtins/RoundTest.java A equations/src/test/java/org/cytoscape/equations/builtins/LowerTest.java A equations/src/test/java/org/cytoscape/equations/builtins/VarTest.java A equations/src/test/java/org/cytoscape/equations/builtins/ErrorTest.java A equations/src/test/java/org/cytoscape/equations/builtins/NthTest.java A equations/src/test/java/org/cytoscape/equations/builtins/LeftTest.java A equations/src/test/java/org/cytoscape/equations/builtins/TanhTest.java A equations/src/test/java/org/cytoscape/equations/builtins/UpperTest.java A equations/src/test/java/org/cytoscape/equations/builtins/CoshTest.java A equations/src/test/java/org/cytoscape/equations/builtins/Framework.java A equations/src/test/java/org/cytoscape/equations/builtins/IfTest.java A equations/src/test/java/org/cytoscape/equations/builtins/SListTest.java A equations/src/main A equations/src/main/java A equations/src/main/java/org A equations/src/main/java/org/cytoscape A equations/src/main/java/org/cytoscape/equations A equations/src/main/java/org/cytoscape/equations/FunctionError.java A equations/src/main/java/org/cytoscape/equations/EqnParser.java A equations/src/main/java/org/cytoscape/equations/StringList.java A equations/src/main/java/org/cytoscape/equations/Tokeniser.java A equations/src/main/java/org/cytoscape/equations/DoubleList.java A equations/src/main/java/org/cytoscape/equations/CodeAndSourceLocation.java A equations/src/main/java/org/cytoscape/equations/ArgDescriptor.java A equations/src/main/java/org/cytoscape/equations/AbstractFunction.java A equations/src/main/java/org/cytoscape/equations/builtins A equations/src/main/java/org/cytoscape/equations/builtins/Not.java A equations/src/main/java/org/cytoscape/equations/builtins/Sign.java A equations/src/main/java/org/cytoscape/equations/builtins/Largest.java A equations/src/main/java/org/cytoscape/equations/builtins/Sinh.java A equations/src/main/java/org/cytoscape/equations/builtins/And.java A equations/src/main/java/org/cytoscape/equations/builtins/Last.java A equations/src/main/java/org/cytoscape/equations/builtins/Sum.java A equations/src/main/java/org/cytoscape/equations/builtins/Combin.java A equations/src/main/java/org/cytoscape/equations/builtins/Mid.java A equations/src/main/java/org/cytoscape/equations/builtins/Ln.java A equations/src/main/java/org/cytoscape/equations/builtins/Average.java A equations/src/main/java/org/cytoscape/equations/builtins/HarMean.java A equations/src/main/java/org/cytoscape/equations/builtins/GeoMean.java A equations/src/main/java/org/cytoscape/equations/builtins/Permut.java A equations/src/main/java/org/cytoscape/equations/builtins/BList.java A equations/src/main/java/org/cytoscape/equations/builtins/Mod.java A equations/src/main/java/org/cytoscape/equations/builtins/Or.java A equations/src/main/java/org/cytoscape/equations/builtins/Log.java A equations/src/main/java/org/cytoscape/equations/builtins/FList.java A equations/src/main/java/org/cytoscape/equations/builtins/Radians.java A equations/src/main/java/org/cytoscape/equations/builtins/Min.java A equations/src/main/java/org/cytoscape/equations/builtins/Concatenate.java A equations/src/main/java/org/cytoscape/equations/builtins/Mode.java A equations/src/main/java/org/cytoscape/equations/builtins/Max.java A equations/src/main/java/org/cytoscape/equations/builtins/StDev.java A equations/src/main/java/org/cytoscape/equations/builtins/First.java A equations/src/main/java/org/cytoscape/equations/builtins/Count.java A equations/src/main/java/org/cytoscape/equations/builtins/Sin.java A equations/src/main/java/org/cytoscape/equations/builtins/Sqrt.java A equations/src/main/java/org/cytoscape/equations/builtins/ASin.java A equations/src/main/java/org/cytoscape/equations/builtins/Trunc.java A equations/src/main/java/org/cytoscape/equations/builtins/Exp.java A equations/src/main/java/org/cytoscape/equations/builtins/Median.java A equations/src/main/java/org/cytoscape/equations/builtins/NormDist.java A equations/src/main/java/org/cytoscape/equations/builtins/Now.java A equations/src/main/java/org/cytoscape/equations/builtins/ListToString.java A equations/src/main/java/org/cytoscape/equations/builtins/ATan2.java A equations/src/main/java/org/cytoscape/equations/builtins/Abs.java A equations/src/main/java/org/cytoscape/equations/builtins/Pi.java A equations/src/main/java/org/cytoscape/equations/builtins/Substitute.java A equations/src/main/java/org/cytoscape/equations/builtins/Value.java A equations/src/main/java/org/cytoscape/equations/builtins/Right.java A equations/src/main/java/org/cytoscape/equations/builtins/Len.java A equations/src/main/java/org/cytoscape/equations/builtins/Degrees.java A equations/src/main/java/org/cytoscape/equations/builtins/Product.java A equations/src/main/java/org/cytoscape/equations/builtins/Today.java A equations/src/main/java/org/cytoscape/equations/builtins/Tan.java A equations/src/main/java/org/cytoscape/equations/builtins/IList.java A equations/src/main/java/org/cytoscape/equations/builtins/Cos.java A equations/src/main/java/org/cytoscape/equations/builtins/ACos.java A equations/src/main/java/org/cytoscape/equations/builtins/Round.java A equations/src/main/java/org/cytoscape/equations/builtins/Lower.java A equations/src/main/java/org/cytoscape/equations/builtins/Var.java A equations/src/main/java/org/cytoscape/equations/builtins/Error.java A equations/src/main/java/org/cytoscape/equations/builtins/Nth.java A equations/src/main/java/org/cytoscape/equations/builtins/Left.java A equations/src/main/java/org/cytoscape/equations/builtins/Tanh.java A equations/src/main/java/org/cytoscape/equations/builtins/Upper.java A equations/src/main/java/org/cytoscape/equations/builtins/Cosh.java A equations/src/main/java/org/cytoscape/equations/builtins/If.java A equations/src/main/java/org/cytoscape/equations/builtins/SList.java A equations/src/main/java/org/cytoscape/equations/parse_tree A equations/src/main/java/org/cytoscape/equations/parse_tree/BooleanConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FConvNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/UnaryOpNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FloatConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/Node.java A equations/src/main/java/org/cytoscape/equations/parse_tree/StringConstantNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/IdentNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/BinOpNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/FuncCallNode.java A equations/src/main/java/org/cytoscape/equations/parse_tree/SConvNode.java A equations/src/main/java/org/cytoscape/equations/BooleanList.java A equations/src/main/java/org/cytoscape/equations/ArgType.java A equations/src/main/java/org/cytoscape/equations/EqnCompiler.java A equations/src/main/java/org/cytoscape/equations/Token.java A equations/src/main/java/org/cytoscape/equations/EqnParserImpl.java A equations/src/main/java/org/cytoscape/equations/FunctionUtil.java A equations/src/main/java/org/cytoscape/equations/EquationUtil.java A equations/src/main/java/org/cytoscape/equations/interpreter A equations/src/main/java/org/cytoscape/equations/interpreter/Instruction.java A equations/src/main/java/org/cytoscape/equations/interpreter/IdentDescriptor.java A equations/src/main/java/org/cytoscape/equations/interpreter/Interpreter.java A equations/src/main/java/org/cytoscape/equations/Function.java A equations/src/main/java/org/cytoscape/equations/Equation.java A equations/src/main/java/org/cytoscape/equations/LongList.java A equations/src/main/java/org/cytoscape/equations/Parser.java A equations/pom.xml A render.immed A render.immed/src A render.immed/src/test A render.immed/src/test/java A render.immed/src/test/java/cytoscape A render.immed/src/test/java/cytoscape/render A render.immed/src/test/java/cytoscape/render/immed A render.immed/src/test/java/cytoscape/render/immed/OldGraphGraphics.java A render.immed/src/test/java/cytoscape/render/immed/GraphGraphicsTest.java A render.immed/src/main A render.immed/src/main/java A render.immed/src/main/java/cytoscape A render.immed/src/main/java/cytoscape/render A render.immed/src/main/java/cytoscape/render/immed AU render.immed/src/main/java/cytoscape/render/immed/EdgeAnchors.java AU render.immed/src/main/java/cytoscape/render/immed/GraphGraphics.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape A render.immed/src/main/java/cytoscape/render/immed/nodeshape/HexagonNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/OctagonNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/DiamondNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/EllipseNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/LegacyCustomNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/NodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/VeeNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/ParallelogramNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/AbstractNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/RectangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/RoundedRectangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/nodeshape/TriangleNodeShape.java A render.immed/src/main/java/cytoscape/render/immed/arrow A render.immed/src/main/java/cytoscape/render/immed/arrow/DeltaArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/DiamondArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/ArrowheadArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/NoArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/HalfTopArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/TeeArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/Arrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/HalfBottomArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/DiscArrow.java A render.immed/src/main/java/cytoscape/render/immed/arrow/AbstractArrow.java A render.immed/pom.xml At revision 21781 no change for http://chianti.ucsd.edu/svn/corelibs/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 38184 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar ERROR: Failed to parse POMs java.io.IOException: Cannot run program "java" (in directory "<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20corelibs/ws/trunk";)>: java.io.IOException: error=24, Too many open files at java.lang.ProcessBuilder.start(ProcessBuilder.java:460) at hudson.Proc$LocalProc.<init>(Proc.java:192) at hudson.Proc$LocalProc.<init>(Proc.java:164) at hudson.Launcher$LocalLauncher.launch(Launcher.java:638) at hudson.Launcher$ProcStarter.start(Launcher.java:273) at hudson.maven.MavenProcessFactory.newProcess(MavenProcessFactory.java:198) at hudson.maven.ProcessCache.get(ProcessCache.java:231) at hudson.maven.MavenModuleSetBuild$RunnerImpl.doRun(MavenModuleSetBuild.java:470) at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:416) at hudson.model.Run.run(Run.java:1258) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:318) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:129) Caused by: java.io.IOException: java.io.IOException: error=24, Too many open files at java.lang.UNIXProcess.<init>(UNIXProcess.java:148) at java.lang.ProcessImpl.start(ProcessImpl.java:65) at java.lang.ProcessBuilder.start(ProcessBuilder.java:453) ... 12 more [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] Cytoscape Core Libraries Parent POM [INFO] commons-cli-1-x-cytocape-custom [INFO] equations [INFO] util-intr [INFO] geom-spacial [INFO] geom-rtree [INFO] GINY API [INFO] graph-fixed [INFO] graph-dynamic [INFO] nerius-math-xform [INFO] obo [INFO] phoebe-dnd [INFO] render-immed [INFO] render-export [INFO] render-stateful [INFO] task [INFO] undo-support [INFO] fing [INFO] ding [INFO] Cytoscape Documentation [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Core Libraries Parent POM [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing commons-cli-1-x-cytocape-custom [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Findbugs needs sources to be compiled. Please build project or edit pom.xml to set the <outputDirectory> property before executing sonar. [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Thu Sep 09 20:27:59 EDT 2010 [INFO] Final Memory: 28M/337M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. 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