Author: mes
Date: 2010-09-09 17:43:07 -0700 (Thu, 09 Sep 2010)
New Revision: 21782
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterFactory.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterManager.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterFactory.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterManager.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterFactory.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterManager.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterFactory.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterManager.java
Removed:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/graphics/
Modified:
core3/io-api/trunk/pom.xml
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriter.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterFactory.java
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterManager.java
Log:
first shot at a writer api
Modified: core3/io-api/trunk/pom.xml
===================================================================
--- core3/io-api/trunk/pom.xml 2010-09-09 21:28:06 UTC (rev 21781)
+++ core3/io-api/trunk/pom.xml 2010-09-10 00:43:07 UTC (rev 21782)
@@ -101,7 +101,12 @@
<groupId>org.cytoscape</groupId>
<artifactId>work-api</artifactId>
<version>1.0-SNAPSHOT</version>
- </dependency>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>session-api</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
</dependencies>
</project>
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,77 @@
+
+package org.cytoscape.io.write;
+
+import org.cytoscape.work.AbstractTask;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.Tunable;
+import org.cytoscape.work.util.ListSingleSelection;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+import java.util.Map;
+import java.util.TreeMap;
+import java.util.ArrayList;
+
+/**
+ */
+public abstract class AbstractCyWriter<T extends CyWriterManager> extends
AbstractTask
+ implements CyWriter {
+
+ private File outputFile;
+
+ private boolean cancelTask = false;
+
+ @Tunable(description="Select the output file name")
+ public final void setOutputFile(File f) {
+ if ( f != null )
+ outputFile = f;
+ }
+
+ public final File getOutputFile() {
+ return outputFile;
+ }
+
+ @Tunable(description = "Select the export file format")
+ public final ListSingleSelection<String> options;
+
+ private final Map<String,CyFileFilter> descriptionFilterMap;
+
+ protected final T writerManager;
+
+ public AbstractCyWriter(T writerManager) {
+ if ( writerManager == null )
+ throw new NullPointerException("CyWriterManager is
null");
+ this.writerManager = writerManager;
+
+ descriptionFilterMap = new TreeMap<String,CyFileFilter>();
+ for ( CyFileFilter f : writerManager.getAvailableWriters() )
+ descriptionFilterMap.put( f.getDescription(), f );
+
+ options = new ListSingleSelection<String>( new ArrayList<String>(
descriptionFilterMap.keySet() ) );
+ }
+
+ public final void run(TaskMonitor tm) {
+ if ( outputFile == null )
+ throw new NullPointerException("Output file has not be
specified!");
+
+ String desc = options.getSelectedValue();
+ if ( desc == null )
+ throw new NullPointerException("No file type has been
specified!");
+
+ CyFileFilter filter = descriptionFilterMap.get(desc);
+ if ( filter == null )
+ throw new NullPointerException("No file filter found
for specified file type!");
+
+ CyWriter writer = getWriter(filter,outputFile);
+ if ( writer == null )
+ throw new NullPointerException("No CyWriter found for specified
file type!");
+
+ insertTaskAfterCurrentTask( writer );
+ }
+
+ protected abstract CyWriter getWriter(CyFileFilter filter, File out);
+
+ public void cancel() {
+ cancelTask = true;
+ }
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriter.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriter.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,24 @@
+
+package org.cytoscape.io.write;
+
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+/**
+ */
+public final class CyNetworkWriter extends
AbstractCyWriter<CyNetworkWriterManager> {
+
+ private final CyNetwork network;
+
+ public CyNetworkWriter(CyNetworkWriterManager writerManager, CyNetwork
network ) {
+ super(writerManager);
+ if ( network == null )
+ throw new NullPointerException("Network is null");
+ this.network = network;
+ }
+
+ protected CyWriter getWriter(CyFileFilter filter, File file) {
+ return writerManager.getWriter(network,filter,file);
+ }
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterFactory.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterFactory.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterFactory.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,13 @@
+package org.cytoscape.io.write;
+
+import java.io.IOException;
+
+import org.cytoscape.io.FileIOFactory;
+import org.cytoscape.model.CyNetwork;
+
+/**
+ *
+ */
+public interface CyNetworkWriterFactory extends CyWriterFactory {
+ void setNetwork(CyNetwork net);
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterManager.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterManager.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyNetworkWriterManager.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,47 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package org.cytoscape.io.write;
+
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+/**
+ * Central registry for all Cytoscape export classes.
+ */
+public interface CyNetworkWriterManager extends CyWriterManager {
+
+ CyWriter getWriter(CyNetwork net, CyFileFilter filter, File file);
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriter.java
===================================================================
--- core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriter.java
(rev 0)
+++ core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,24 @@
+
+package org.cytoscape.io.write;
+
+import org.cytoscape.model.CyTable;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+/**
+ */
+public final class CyTableWriter extends
AbstractCyWriter<CyTableWriterManager> {
+
+ private final CyTable table;
+
+ public CyTableWriter(CyTableWriterManager writerManager, CyTable table ) {
+ super(writerManager);
+ if ( table == null )
+ throw new NullPointerException("Table is null");
+ this.table = table;
+ }
+
+ protected CyWriter getWriter(CyFileFilter filter, File file) {
+ return writerManager.getWriter(table,filter,file);
+ }
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterFactory.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterFactory.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterFactory.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,14 @@
+package org.cytoscape.io.write;
+
+import java.io.IOException;
+
+import org.cytoscape.io.FileIOFactory;
+import org.cytoscape.model.CyTable;
+
+/**
+ * Returns a Task that will write
+ */
+public interface CyTableWriterFactory extends CyWriterFactory {
+
+ void setTable(CyTable table);
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterManager.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterManager.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyTableWriterManager.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,44 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package org.cytoscape.io.write;
+
+import org.cytoscape.model.CyTable;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+public interface CyTableWriterManager extends CyWriterManager {
+ CyWriter getWriter(CyTable table, CyFileFilter filter, File file);
+}
+
Modified: core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriter.java
===================================================================
--- core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriter.java
2010-09-09 21:28:06 UTC (rev 21781)
+++ core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -1,31 +1,10 @@
+
package org.cytoscape.io.write;
-import org.cytoscape.io.FileIOFactory;
-import java.io.File;
+import org.cytoscape.work.Task;
/**
- * An interface that should be extended to write any type of
- * data. Writers for specific types of data, like networks or
- * attributes, will extend this interface and provide setter
- * methods to specify the output content. Writers may be
- * composed of several child interfaces to support writing of
- * heterogenous data types (i.e. networks AND attributes).
*/
-public interface CyWriter extends FileIOFactory {
-
- /**
- * When called this method will write whatever data it has been
- * provided by its extending interfaces to the specified {...@link
File}.
- * @param f The {...@link File} that will be written to by this writer.
- */
- public void write(File f);
-
- /**
- * Cancels writing if one thread is waiting for the completion of
- * <code>CyWriter.write()</code>.
- * <code>CyWriter.write()</code> will prematurely terminate by
- * throwing an <code>IOException</code>.
- */
- public void cancel();
+public interface CyWriter extends Task {
}
Modified:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterFactory.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterFactory.java
2010-09-09 21:28:06 UTC (rev 21781)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterFactory.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -1,11 +1,13 @@
package org.cytoscape.io.write;
-import java.io.IOException;
+import java.io.File;
import org.cytoscape.io.FileIOFactory;
+/**
+ *
+ */
public interface CyWriterFactory extends FileIOFactory {
-
- public CyWriter getWriter() throws IOException;
-
+ void setOutputFile(File f);
+ CyWriter getWriter();
}
Modified:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterManager.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterManager.java
2010-09-09 21:28:06 UTC (rev 21781)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/CyWriterManager.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -34,31 +34,21 @@
*/
package org.cytoscape.io.write;
-import java.util.Map;
+import java.util.List;
+import java.io.File;
-import org.cytoscape.io.DataCategory;
+import org.cytoscape.io.CyFileFilter;
/**
- * Central registry for all Cytoscape import classes.
+ * Central registry for all Cytoscape export classes.
*/
public interface CyWriterManager {
- /*
- * Not generic because Spring does not support it now.
- */
- @SuppressWarnings("unchecked")
- public void addWriterFactory(CyWriterFactory factory, Map props);
-
- @SuppressWarnings("unchecked")
- public void removeWriterFactory(CyWriterFactory factory, Map props);
-
/**
- * Get a file writer if the file type is supported in Cytoscape.
- *
- * @param fileName
- * @return
- * @throws IllegalArgumentException File type is not supported.
+ * Will return the names of the avai
*/
- public CyWriter getWriter(DataCategory category) throws
IllegalArgumentException;
+ List<CyFileFilter> getAvailableWriters();
+
+ public CyWriterFactory getMatchingFactory(CyFileFilter filter, File
outFile);
}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriter.java
===================================================================
--- core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriter.java
(rev 0)
+++ core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,54 @@
+
+package org.cytoscape.io.write;
+
+import org.cytoscape.session.CySessionManager;
+import org.cytoscape.io.CyFileFilter;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.AbstractTask;
+import java.io.File;
+import java.util.List;
+
+/**
+ */
+public final class SessionWriter extends AbstractTask implements CyWriter {
+
+ private final CySessionManager sessionMgr;
+ private final SessionWriterManager writerMgr;
+ private final File outputFile;
+
+ private boolean cancelTask;
+
+ public SessionWriter(SessionWriterManager writerMgr, CySessionManager
sessionMgr, File outputFile) {
+
+ if ( writerMgr == null )
+ throw new NullPointerException("Writer Manager is
null");
+ this.writerMgr = writerMgr;
+
+ if ( sessionMgr == null )
+ throw new NullPointerException("Session Manager is
null");
+ this.sessionMgr = sessionMgr;
+
+ if ( outputFile == null )
+ throw new NullPointerException("Output File is null");
+ this.outputFile = outputFile;
+ }
+
+ public final void run(TaskMonitor tm) {
+
+ List<CyFileFilter> filters = writerMgr.getAvailableWriters();
+ if ( filters == null || filters.size() < 1)
+ throw new NullPointerException("No Session file filters
found");
+ if ( filters.size() > 1 )
+ throw new IllegalArgumentException("Found too many
session filters!");
+
+ CyWriter writer =
writerMgr.getWriter(sessionMgr,filters.get(0),outputFile);
+ if ( writer == null )
+ throw new NullPointerException("No CyWriter found for specified
file type!");
+
+ insertTaskAfterCurrentTask( writer );
+ }
+
+ public void cancel() {
+ cancelTask = true;
+ }
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterFactory.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterFactory.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterFactory.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,12 @@
+package org.cytoscape.io.write;
+
+
+import org.cytoscape.session.CySessionManager;
+
+/**
+ * Returns a Task that will write
+ */
+public interface SessionWriterFactory extends CyWriterFactory {
+
+ void setSessionManager(CySessionManager mgr);
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterManager.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterManager.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/SessionWriterManager.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,44 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package org.cytoscape.io.write;
+
+import org.cytoscape.session.CySessionManager;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+public interface SessionWriterManager extends CyWriterManager {
+
+ CyWriter getWriter(CySessionManager mgr, CyFileFilter filter, File
file);
+}
Added: core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriter.java
===================================================================
--- core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriter.java
(rev 0)
+++ core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriter.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,31 @@
+
+package org.cytoscape.io.write;
+
+import org.cytoscape.view.model.View;
+import org.cytoscape.view.presentation.RenderingEngine;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+/**
+ */
+public final class ViewWriter extends AbstractCyWriter<ViewWriterManager> {
+
+ private final View<?> view;
+ private final RenderingEngine re;
+
+ public ViewWriter(ViewWriterManager writerManager, View<?> view,
RenderingEngine re ) {
+ super(writerManager);
+
+ if ( view == null )
+ throw new NullPointerException("view is null");
+ this.view = view;
+
+ if ( re == null )
+ throw new NullPointerException("rendering engine is
null");
+ this.re = re;
+ }
+
+ protected CyWriter getWriter(CyFileFilter filter, File file) {
+ return writerManager.getWriter(view,re,filter,file);
+ }
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterFactory.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterFactory.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterFactory.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,13 @@
+package org.cytoscape.io.write;
+
+
+import org.cytoscape.view.presentation.RenderingEngine;
+import org.cytoscape.view.model.View;
+
+/**
+ * Returns a Task that will write
+ */
+public interface ViewWriterFactory extends CyWriterFactory {
+
+ void setViewRenderer(View<?> view, RenderingEngine re);
+}
Added:
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterManager.java
===================================================================
---
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterManager.java
(rev 0)
+++
core3/io-api/trunk/src/main/java/org/cytoscape/io/write/ViewWriterManager.java
2010-09-10 00:43:07 UTC (rev 21782)
@@ -0,0 +1,45 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ */
+package org.cytoscape.io.write;
+
+import org.cytoscape.view.model.View;
+import org.cytoscape.view.presentation.RenderingEngine;
+import org.cytoscape.io.CyFileFilter;
+import java.io.File;
+
+public interface ViewWriterManager extends CyWriterManager {
+
+ CyWriter getWriter(View<?> view, RenderingEngine re, CyFileFilter
filter, File file);
+}
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