Author: kono
Date: 2010-09-14 15:20:11 -0700 (Tue, 14 Sep 2010)
New Revision: 21853
Added:
new_cytoscape_website/trunk/images/people/clopes.jpg
new_cytoscape_website/trunk/images/people/igor.png
Modified:
new_cytoscape_website/trunk/css/main.css
new_cytoscape_website/trunk/development_team.html
new_cytoscape_website/trunk/download.html
new_cytoscape_website/trunk/download.php
new_cytoscape_website/trunk/download_config.php
new_cytoscape_website/trunk/index.html
new_cytoscape_website/trunk/js/menu_generator.js
new_cytoscape_website/trunk/plugin_submit.html
Log:
Links are updated for new plugin web site.
Modified: new_cytoscape_website/trunk/css/main.css
===================================================================
--- new_cytoscape_website/trunk/css/main.css 2010-09-14 22:13:50 UTC (rev
21852)
+++ new_cytoscape_website/trunk/css/main.css 2010-09-14 22:20:11 UTC (rev
21853)
@@ -510,7 +510,7 @@
}
#downleft, #downright {
- height:510px;
+ height:auto;
}
#downleft li {
Modified: new_cytoscape_website/trunk/development_team.html
===================================================================
--- new_cytoscape_website/trunk/development_team.html 2010-09-14 22:13:50 UTC
(rev 21852)
+++ new_cytoscape_website/trunk/development_team.html 2010-09-14 22:20:11 UTC
(rev 21853)
@@ -116,12 +116,15 @@
</div>
<div class="group">
<h3>University of Toronto (Ontario, Canada)</h3>
- <div class="person"> <a href="http://baderlab.org/";><img
src="images/people/jm1.jpg"></img>
+ <div class="person"><a href="http://baderlab.org/";><img
src="images/people/jm1.jpg"></img>
<div class="name">Jason Montojo</div>
</a></div>
- <div class="person"> <a href="http://baderlab.org/";><img
src="images/people/NO_PHOTO_YET.jpg"></img>
- <div class="name"></div>
+ <div class="person"><a href="http://baderlab.org/";><img
src="images/people/clopes.jpg"></img>
+ <div class="name">Christian Lopes</div>
</a></div>
+ <div class="person"><a href="http://baderlab.org/IgorRodchenkov";><img
src="images/people/igor.png"></img>
+ <div class="name">Igor Rodchenkov</div>
+ </a></div>
</div>
<div class="group">
<h3>Other Institutes</h3>
@@ -178,9 +181,12 @@
<li>Robert Sheridan</li>
<li>Yeyejide Adeleye</li>
<li>Mathieu Michaud</li>
-
- <li>Unilever</li>
</ul>
+ <p>
+ <ul>
+ <li>Unilever</li>
+ </ul>
+ </p>
</div>
</div>
<script src="js/footer.js"></script>
Modified: new_cytoscape_website/trunk/download.html
===================================================================
--- new_cytoscape_website/trunk/download.html 2010-09-14 22:13:50 UTC (rev
21852)
+++ new_cytoscape_website/trunk/download.html 2010-09-14 22:20:11 UTC (rev
21853)
@@ -30,8 +30,9 @@
<div id="container">
<script src="js/header.js"></script>
<div id="titleimage"> <img src="images/icon/Downloads-128.png" />
- <h1>Download Cytoscape
<script>document.write(cytoscapeVersion)</script></h1>
+ <h1>Download Cytoscape</h1>
</div>
+
<div id="downleft" class="blockleft">
<h2>License Agreement</h2>
<p> Cytoscape is available as a platform-independent open-source Java
application, released under the
@@ -50,10 +51,7 @@
GNU LESSER GENERAL PUBLIC LICENSE
Version 2.1, February 1999
- Copyright (C) 1991, 1999 Free Software Foundation, Inc.
- 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
+ Copyright (C) 1991, 1999 Free Software Foundation, Inc. 59 Temple Place,
Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and
distribute verbatim copies of this license document, but changing it is not
allowed.
[This is the first released version of the Lesser GPL. It also counts
as the successor of the GNU Library Public License, version 2, hence
@@ -520,9 +518,7 @@
<label> <span>Email address : </span>
<input value="" class="validate[required,custom[email]] text-input"
type="text" name="email" id="email" />
</label>
- <label> <span>Confirm email address : </span>
- <input value="" class="validate[required,confirm[email]] text-input"
type="text" name="email2" id="email2" />
- </label>
+
</fieldset>
<fieldset>
<legend>Conditions</legend>
Modified: new_cytoscape_website/trunk/download.php
===================================================================
--- new_cytoscape_website/trunk/download.php 2010-09-14 22:13:50 UTC (rev
21852)
+++ new_cytoscape_website/trunk/download.php 2010-09-14 22:20:11 UTC (rev
21853)
@@ -101,8 +101,8 @@
<hr />
<h2>Development Versions</h2>
<ul>
- <li><a href="#">Beta Version: </a></li>
- <li><a href="#">Nightly Build</a></li>
+ <li><a href="<?=$beta_2x?>">Beta Version: Cytoscape 2.8</a></li>
+ <li>Nightly Build</li>
</ul>
</div>
</div>
Modified: new_cytoscape_website/trunk/download_config.php
===================================================================
--- new_cytoscape_website/trunk/download_config.php 2010-09-14 22:13:50 UTC
(rev 21852)
+++ new_cytoscape_website/trunk/download_config.php 2010-09-14 22:20:11 UTC
(rev 21853)
@@ -27,4 +27,8 @@
# Older versions
+# Beta and Development versions
+
+$beta_2x = $chianti_base."Cyto-2_8-beta";
+
?>
Added: new_cytoscape_website/trunk/images/people/clopes.jpg
===================================================================
(Binary files differ)
Property changes on: new_cytoscape_website/trunk/images/people/clopes.jpg
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: new_cytoscape_website/trunk/images/people/igor.png
===================================================================
(Binary files differ)
Property changes on: new_cytoscape_website/trunk/images/people/igor.png
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Modified: new_cytoscape_website/trunk/index.html
===================================================================
--- new_cytoscape_website/trunk/index.html 2010-09-14 22:13:50 UTC (rev
21852)
+++ new_cytoscape_website/trunk/index.html 2010-09-14 22:20:11 UTC (rev
21853)
@@ -112,7 +112,7 @@
</div>
<div class="introbox">
<h3>Network Data Integration, Analysis, and Visualization in a Box</h3>
- <p> Cytoscape is an open source software platform for visualizing
complex-networks and integrating these with any type of attribute data. A lot
of <a href="plugins.html">plugins</a> are available for various kinds of
problem domains, including bioinformatics, social network analysis, and
semantic web. </p>
+ <p> Cytoscape is an open source software platform for visualizing <a
href="http://en.wikipedia.org/wiki/Complex_network";>complex-networks</a> and
integrating these with any type of attribute data. A lot of <a
href="http://chianti.ucsd.edu/cyto_web/plugins/";>plugins</a> are available for
various kinds of problem domains, including bioinformatics, social network
analysis, and semantic web. </p>
<a href="download.html">
<button class="button medium blue">Download Cytoscape
Now</button>
@@ -167,7 +167,7 @@
interaction data sets</a> in <a
href="http://cytoscape.org/manual/Cytoscape2_7Manual.html#Supported%20Network%20File%20Formats";>many
formats</a></li>
<li>Project and integrate global datasets and functional
annotations</li>
<li>Establish powerful visual mappings across these data</li>
- <li>Perform advanced analysis and modeling using <a
href="http://chianti.ucsd.edu/cyto_web/plugins_new/";>Cytoscape plugins</a></li>
+ <li>Perform advanced analysis and modeling using <a
href="http://chianti.ucsd.edu/cyto_web/plugins/";>Cytoscape plugins</a></li>
<li>Visualize and analyze human-curated pathway datasets
such as
<a href="http://www.reactome.org/";>Reactome</a> or <a
href="http://www.genome.jp/kegg/pathway.html";>KEGG</a>.</li>
</ul>
Modified: new_cytoscape_website/trunk/js/menu_generator.js
===================================================================
--- new_cytoscape_website/trunk/js/menu_generator.js 2010-09-14 22:13:50 UTC
(rev 21852)
+++ new_cytoscape_website/trunk/js/menu_generator.js 2010-09-14 22:20:11 UTC
(rev 21853)
@@ -15,7 +15,7 @@
// root URL
var baseURL = "http://www.cytoscape.org/";;
-var pluginSiteURL = "http://chianti.ucsd.edu/cyto_web/plugins_new/";;
+var pluginSiteURL = "http://chianti.ucsd.edu/cyto_web/plugins/";;
var latestVersion = "2.7.0";
@@ -100,7 +100,8 @@
function appendDocument() {
$("#documentMenu").append("<ul>" +
"<li><a href=\"" + baseURL + "documentation_users.html\">for
Users</a></li>" +
- "<li><a href=\"" + baseURL +
"documentation_developers.html\">for Developers</a></li></ul>"
+ "<li><a href=\"" + baseURL +
"documentation_developers.html\">for Developers</a></li>" +
+ "<li><a href=\"http://cytoscape.wodaklab.org/wiki/\";>Cytoscape
Wiki</a></li></ul>"
);
}
Modified: new_cytoscape_website/trunk/plugin_submit.html
===================================================================
--- new_cytoscape_website/trunk/plugin_submit.html 2010-09-14 22:13:50 UTC
(rev 21852)
+++ new_cytoscape_website/trunk/plugin_submit.html 2010-09-14 22:20:11 UTC
(rev 21853)
@@ -19,16 +19,16 @@
<div id="documents">
<div class="blockfull">
<h1>Choose Your Plugin File Type</h1>
- <div class="filetype"> <a
href="http://chianti.ucsd.edu/cyto_web/plugins_new/pluginsubmit.php";><img
src="images/icon/File-jar-128.png" /></a>
+ <div class="filetype"> <a
href="http://chianti.ucsd.edu/cyto_web/plugins/pluginsubmit.php";><img
src="images/icon/File-jar-128.png" /></a>
<h3>JAR File</h3>
<p>A single <a
href="http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_Plugin_Tutorial";>
properly formatted plugin jar</a>. We will read (and validate) the plugin
metadata (name, description, version, etc.) from the jar.</p>
</div>
- <div class="filetype"> <a
href="http://chianti.ucsd.edu/cyto_web/plugins_new/pluginsubmitzip.php";><img
src="images/icon/Zip-gold-blue-128.png"/></a>
+ <div class="filetype"> <a
href="http://chianti.ucsd.edu/cyto_web/plugins/pluginsubmitzip.php";><img
src="images/icon/Zip-gold-blue-128.png"/></a>
<h3>ZIP File</h3>
<p>A file with extension .zip, which should contain the plugin jar and
any other necessary data. The file will be loaded as is and you will need to
enter the plugin metadata.</p>
</div>
- <div class="filetype"><a
href="http://chianti.ucsd.edu/cyto_web/plugins_new/pluginsubmiturl.php";><img
src="images/icon/Global-network-128.png" /></a>
+ <div class="filetype"><a
href="http://chianti.ucsd.edu/cyto_web/plugins/pluginsubmiturl.php";><img
src="images/icon/Global-network-128.png" /></a>
<h3>URL</h3>
<p>Plugin information with project URL. Since Cytoscape does not host
the Zip/Jar file, they will not appear at the Cytoscape plugin manager. Users
should download them manualy by following the project URLs, if they are
interested. </p>
</div>
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
