Author: mes
Date: 2010-09-16 13:47:09 -0700 (Thu, 16 Sep 2010)
New Revision: 21899
Added:
cytoscape/trunk/pom.xml
Modified:
cytoscape/trunk/application/pom.xml
cytoscape/trunk/corelibs/pom.xml
cytoscape/trunk/coreplugins/pom.xml
Log:
added parent pom to rule them all
Modified: cytoscape/trunk/application/pom.xml
===================================================================
--- cytoscape/trunk/application/pom.xml 2010-09-16 20:33:05 UTC (rev 21898)
+++ cytoscape/trunk/application/pom.xml 2010-09-16 20:47:09 UTC (rev 21899)
@@ -3,16 +3,17 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
<modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>cytoscape</groupId>
+ <artifactId>parent</artifactId>
+ <version>2.8.0-beta2-SNAPSHOT</version>
+ </parent>
<groupId>cytoscape</groupId>
<artifactId>application</artifactId>
- <version>2.8.0-beta2-SNAPSHOT</version>
<packaging>jar</packaging>
<name>Cytoscape Application</name>
- <properties>
- <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
- </properties>
<build>
@@ -73,59 +74,6 @@
</executions>
</plugin>
-->
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <configuration>
- <source>1.5</source>
- <target>1.5</target>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-surefire-plugin</artifactId>
- <configuration>
- <argLine>-Xmx1G</argLine>
- <redirectTestOutputToFile>true</redirectTestOutputToFile>
- </configuration>
- </plugin>
- <!-- generates a javadoc jar suitable for use in an IDE -->
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-javadoc-plugin</artifactId>
- <configuration>
- <encoding>UTF-8</encoding>
- <locale>en</locale>
- <javadocVersion>1.5</javadocVersion>
- <links>
- <link>http://download.oracle.com/javase/1.5.0/docs/api/</link>
- </links>
- <footer>Cytoscape API</footer>
- <header>Cytoscape API</header>
- <bottom>Copyright 2010 Cytoscape Consortium. All rights
reserved.</bottom>
- </configuration>
- <executions>
- <execution>
- <id>attach-javadocs</id>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- <!-- generates a sources jar suitable for use in an IDE -->
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-source-plugin</artifactId>
- <executions>
- <execution>
- <id>attach-sources</id>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
<!-- generates classes for XML handling (bookmarks and
sessions) -->
<plugin>
<groupId>org.jvnet.jaxb2.maven2</groupId>
@@ -272,28 +220,8 @@
</repository>
</repositories>
- <distributionManagement>
- <repository>
- <id>releases</id>
- <name>Internal Releases</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases</url>
- </repository>
- <snapshotRepository>
- <id>snapshots</id>
- <name>Internal Snapshots</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots</url>
- </snapshotRepository>
- </distributionManagement>
-
-
<dependencies>
<dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>3.8.1</version>
- <scope>test</scope>
- </dependency>
- <dependency>
<groupId>cytoscape.corelibs</groupId>
<artifactId>util-intr</artifactId>
<version>${version}</version>
Modified: cytoscape/trunk/corelibs/pom.xml
===================================================================
--- cytoscape/trunk/corelibs/pom.xml 2010-09-16 20:33:05 UTC (rev 21898)
+++ cytoscape/trunk/corelibs/pom.xml 2010-09-16 20:47:09 UTC (rev 21899)
@@ -1,10 +1,14 @@
<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
<modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>cytoscape</groupId>
+ <artifactId>parent</artifactId>
+ <version>2.8.0-beta2-SNAPSHOT</version>
+ </parent>
<groupId>cytoscape.corelibs</groupId>
<artifactId>parent</artifactId>
<packaging>pom</packaging>
- <version>2.8.0-beta2-SNAPSHOT</version>
<name>Cytoscape Core Libraries Parent POM</name>
<properties>
@@ -33,104 +37,5 @@
<module>docs</module>
</modules>
- <build>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-release-plugin</artifactId>
- <version>2.0</version>
- <configuration>
-
<tagBase>svn+ssh://grenache.ucsd.edu/cellar/common/svn/corelibs/tags</tagBase>
- <autoVersionSubmodules>true</autoVersionSubmodules>
- </configuration>
- </plugin>
- </plugins>
-
- <pluginManagement>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <configuration>
- <source>1.5</source>
- <target>1.5</target>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-surefire-plugin</artifactId>
- <configuration>
- <argLine>-Xmx256m</argLine>
- <redirectTestOutputToFile>true</redirectTestOutputToFile>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-javadoc-plugin</artifactId>
- <configuration>
- <encoding>UTF-8</encoding>
- <locale>en</locale>
- <javadocVersion>1.5</javadocVersion>
- <links>
-
<link>http://download.oracle.com/docs/cd/E17476_01/javase/1.5.0/docs/api/</link>
- </links>
- <footer>Cytoscape ${version} Core Libraries API</footer>
- <header>Cytoscape ${version} Core Libraries API</header>
- <bottom>Copyright 2010 Cytoscape Consortium. All rights
reserved.</bottom>
- </configuration>
- <executions>
- <execution>
- <id>attach-javadocs</id>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-source-plugin</artifactId>
- <executions>
- <execution>
- <id>attach-sources</id>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- </plugins>
- </pluginManagement>
- </build>
-
- <dependencies>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>3.8.1</version>
- <scope>test</scope>
- </dependency>
- </dependencies>
-
- <distributionManagement>
- <repository>
- <id>releases</id>
- <name>Internal Releases</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases</url>
- </repository>
- <snapshotRepository>
- <id>snapshots</id>
- <name>Internal Snapshots</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots</url>
- </snapshotRepository>
- </distributionManagement>
-
- <scm>
- <connection>scm:svn:http://chianti.ucsd.edu/svn/corelibs/trunk</connection>
-
<developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/corelibs/trunk</developerConnection>
- <url>http://chianti.ucsd.edu/svn/corelibs/trunk</url>
- </scm>
-
-
</project>
Modified: cytoscape/trunk/coreplugins/pom.xml
===================================================================
--- cytoscape/trunk/coreplugins/pom.xml 2010-09-16 20:33:05 UTC (rev 21898)
+++ cytoscape/trunk/coreplugins/pom.xml 2010-09-16 20:47:09 UTC (rev 21899)
@@ -1,16 +1,16 @@
<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
<modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>cytoscape</groupId>
+ <artifactId>parent</artifactId>
+ <version>2.8.0-beta2-SNAPSHOT</version>
+ </parent>
<groupId>cytoscape.coreplugins</groupId>
<artifactId>parent</artifactId>
<packaging>pom</packaging>
- <version>2.8.0-beta2-SNAPSHOT</version>
<name>Cytoscape Core Plugins Parent POM</name>
- <properties>
- <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
- </properties>
-
<modules>
<module>AdvancedNetworkMerge</module>
<module>AutomaticLayout</module>
@@ -34,38 +34,9 @@
</modules>
<build>
-
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-release-plugin</artifactId>
- <version>2.0</version>
- <configuration>
-
<tagBase>svn+ssh://grenache.ucsd.edu/cellar/common/svn/coreplugins/tags</tagBase>
- <autoVersionSubmodules>true</autoVersionSubmodules>
- </configuration>
- </plugin>
- </plugins>
-
<pluginManagement>
<plugins>
<plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <configuration>
- <source>1.5</source>
- <target>1.5</target>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-surefire-plugin</artifactId>
- <configuration>
- <argLine>-Xmx1G</argLine>
- <redirectTestOutputToFile>true</redirectTestOutputToFile>
- </configuration>
- </plugin>
- <plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2-beta-5</version>
<configuration>
@@ -150,19 +121,6 @@
</repository>
</repositories>
- <distributionManagement>
- <repository>
- <id>releases</id>
- <name>Internal Releases</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases</url>
- </repository>
- <snapshotRepository>
- <id>snapshots</id>
- <name>Internal Snapshots</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots</url>
- </snapshotRepository>
- </distributionManagement>
-
<dependencies>
<dependency>
<groupId>cytoscape</groupId>
@@ -170,19 +128,7 @@
<version>2.8.0-beta1</version>
<scope>provided</scope>
</dependency>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>3.8.1</version>
- <scope>test</scope>
- </dependency>
</dependencies>
- <scm>
-
<connection>scm:svn:http://chianti.ucsd.edu/svn/coreplugins/trunk</connection>
-
<developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/coreplugins/trunk</developerConnection>
- <url>http://chianti.ucsd.edu/svn/coreplugins/trunk</url>
- </scm>
-
</project>
Added: cytoscape/trunk/pom.xml
===================================================================
--- cytoscape/trunk/pom.xml (rev 0)
+++ cytoscape/trunk/pom.xml 2010-09-16 20:47:09 UTC (rev 21899)
@@ -0,0 +1,183 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
+ <modelVersion>4.0.0</modelVersion>
+
+ <groupId>cytoscape</groupId>
+ <artifactId>parent</artifactId>
+ <packaging>pom</packaging>
+ <version>2.8.0-beta2-SNAPSHOT</version>
+ <name>Cytoscape Parent POM</name>
+
+ <properties>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ </properties>
+
+ <modules>
+ <module>corelibs</module>
+ <module>application</module>
+ <module>coreplugins</module>
+ </modules>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-release-plugin</artifactId>
+ <version>2.0</version>
+ <configuration>
+
<tagBase>svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape/tags</tagBase>
+ <autoVersionSubmodules>true</autoVersionSubmodules>
+ </configuration>
+ </plugin>
+ </plugins>
+
+ <pluginManagement>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <configuration>
+ <source>1.5</source>
+ <target>1.5</target>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <configuration>
+ <argLine>-Xmx256m</argLine>
+ <redirectTestOutputToFile>true</redirectTestOutputToFile>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-javadoc-plugin</artifactId>
+ <configuration>
+ <encoding>UTF-8</encoding>
+ <locale>en</locale>
+ <javadocVersion>1.5</javadocVersion>
+ <links>
+ <link>http://download.oracle.com/javase/1.5.0/docs/api/</link>
+ </links>
+ <footer>Cytoscape ${version} API</footer>
+ <header>Cytoscape ${version} API</header>
+ <bottom>Copyright 2010 Cytoscape Consortium. All rights
reserved.</bottom>
+ </configuration>
+ <executions>
+ <execution>
+ <id>attach-javadocs</id>
+ <goals>
+ <goal>jar</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-source-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>attach-sources</id>
+ <goals>
+ <goal>jar</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </pluginManagement>
+ </build>
+
+ <dependencies>
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>3.8.1</version>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
+ <!--
+ Don't add additional repositories!
+ We want everything coming from either Maven Central or our repository.
+ Remember, it's easy to add third party jars to our repository.
+ -->
+ <repositories>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_thirdparty</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Third Party</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_biopax_release</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape BioPAX Release Mirror</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_biopax_snapshot</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape BioPAX Snapshot Mirror</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/</url>
+ </repository>
+ </repositories>
+
+ <distributionManagement>
+ <repository>
+ <id>releases</id>
+ <name>Internal Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases</url>
+ </repository>
+ <snapshotRepository>
+ <id>snapshots</id>
+ <name>Internal Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots</url>
+ </snapshotRepository>
+ </distributionManagement>
+
+ <scm>
+
<connection>scm:svn:http://chianti.ucsd.edu/svn/cytoscape/trunk</connection>
+
<developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape/trunk</developerConnection>
+ <url>http://chianti.ucsd.edu/svn/cytoscape/trunk</url>
+ </scm>
+
+
+</project>
+
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