See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/1045/changes>
Changes: [pwang] Refactored ------------------------------------------ [...truncated 93 lines...] symbol : variable canceled location: class csplugins.layout.algorithms.bioLayout.BioLayoutKKAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithm.java>:[370,6] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.bioLayout.BioLayoutKKAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithm.java>:[415,8] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.bioLayout.BioLayoutKKAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithm.java>:[445,8] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.bioLayout.BioLayoutKKAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[34,2] cannot find symbol symbol : constructor AbstractGraphPartition(org.cytoscape.work.undo.UndoSupport) location: class org.cytoscape.view.layout.AbstractGraphPartition <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[63,32] cannot find symbol symbol : variable network location: class csplugins.layout.algorithms.graphPartition.DegreeSortedCircleLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[64,30] cannot find symbol symbol : variable network location: class csplugins.layout.algorithms.graphPartition.DegreeSortedCircleLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[76,6] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.graphPartition.DegreeSortedCircleLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[86,20] cannot find symbol symbol: variable network final int d1 = network.getAdjacentEdgeList(node1, CyEdge.Type.ANY).size(); <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[87,20] cannot find symbol symbol: variable network final int d2 = network.getAdjacentEdgeList(node2, CyEdge.Type.ANY).size(); <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[101,6] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.graphPartition.DegreeSortedCircleLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java>:[118,7] cannot find symbol symbol : method construct() location: class org.cytoscape.view.layout.AbstractGraphPartition <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithm.java>:[445,52] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.bioLayout.BioLayoutFRAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[226,7] csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm is not abstract and does not override abstract method getTaskIterator() in org.cytoscape.work.TaskFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[286,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[295,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[296,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[382,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[383,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[414,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[415,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[422,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[423,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[496,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[497,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[567,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[568,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[619,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[620,3] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[816,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[817,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:[1169,2] cannot find symbol symbol : variable taskMonitor location: class csplugins.layout.algorithms.hierarchicalLayout.HierarchicalLayoutAlgorithm <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java>:[63,2] cannot find symbol symbol : constructor AbstractGraphPartition(org.cytoscape.work.undo.UndoSupport) location: class org.cytoscape.view.layout.AbstractGraphPartition <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java>:[97,17] cannot find symbol symbol : variable network location: class csplugins.layout.algorithms.graphPartition.ISOMLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java>:[110,7] cannot find symbol symbol : variable canceled location: class csplugins.layout.algorithms.graphPartition.ISOMLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java>:[221,37] cannot find symbol symbol : variable network location: class csplugins.layout.algorithms.graphPartition.ISOMLayout <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java>:[68,2] cannot find symbol symbol : constructor AbstractGraphPartition(org.cytoscape.work.undo.UndoSupport) location: class org.cytoscape.view.layout.AbstractGraphPartition <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java>:[76,2] cannot find symbol symbol : constructor AbstractGraphPartition(org.cytoscape.work.undo.UndoSupport) location: class org.cytoscape.view.layout.AbstractGraphPartition [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 24 seconds [INFO] Finished at: Fri Sep 24 15:02:10 EDT 2010 [INFO] Final Memory: 47M/492M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 Downloading: http://maven.springframework.org/osgi/org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:work-api:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://maven.springframework.org/osgi/org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://maven.springframework.org/osgi/org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 412 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 33 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 912 ms [INFO] Squid extraction... [INFO] Squid extraction done: 351 ms [INFO] Sensor SquidSensor done: 1337 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 44 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 124 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources Downloading: http://maven.springframework.org/osgi/org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://maven.springframework.org/osgi/org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/work-api/1.0-SNAPSHOT/work-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:work-api:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [pax:compile] [INFO] Compiling 14 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 32 seconds [INFO] Finished at: Fri Sep 24 15:02:54 EDT 2010 [INFO] Final Memory: 68M/724M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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