Author: mes
Date: 2010-09-24 12:29:47 -0700 (Fri, 24 Sep 2010)
New Revision: 22048
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AllFactoryTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactoryTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFromFileListTaskTest.java
core3/core-task-impl/trunk/src/test/resources/
core3/core-task-impl/trunk/src/test/resources/bad_names.txt
core3/core-task-impl/trunk/src/test/resources/empty.txt
core3/core-task-impl/trunk/src/test/resources/node_names.txt
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AbstractSelectTaskTester.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllNodesTaskTest.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllTaskTest.java
Log:
added a bunch more unit tests
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java
===================================================================
---
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -54,9 +54,9 @@
public void run(TaskMonitor tm) throws Exception {
if ( nodeView == null )
- throw new Exception("node view is null");
+ throw new NullPointerException("node view is null");
if ( netView == null )
- throw new Exception("network view is null");
+ throw new NullPointerException("network view is null");
final Set<CyNode> selNodes = new HashSet<CyNode>();
final CyNode node = nodeView.getModel();
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java
===================================================================
---
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -65,7 +65,7 @@
public void run(TaskMonitor tm) throws Exception {
if ( file == null )
- throw new Exception("You must specify a file to load!");
+ throw new NullPointerException("You must specify a file
to load!");
try {
FileReader fin = new FileReader(file);
Modified:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AbstractSelectTaskTester.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AbstractSelectTaskTester.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AbstractSelectTaskTester.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -41,16 +41,62 @@
import org.cytoscape.session.CyNetworkManager;
import org.cytoscape.view.model.CyNetworkView;
import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyRow;
+import java.util.List;
+import java.util.ArrayList;
+
public class AbstractSelectTaskTester {
CyNetworkManager netmgr;
TaskMonitor tm;
+ CyNetwork net;
+ CyRow r1;
+ CyEdge e1;
+ CyRow r2;
+ CyEdge e2;
+ CyRow r3;
+ CyNode e3;
+ CyRow r4;
+ CyNode e4;
public void setUp() throws Exception {
CyNetworkView view = mock(CyNetworkView.class);
+
netmgr = mock(CyNetworkManager.class);
when(netmgr.getNetworkView(anyLong())).thenReturn(view);
+
tm = mock(TaskMonitor.class);
+
+ net = mock(CyNetwork.class);
+
+ r1 = mock(CyRow.class);
+ e1 = mock(CyEdge.class);
+ when(e1.attrs()).thenReturn(r1);
+
+ r2 = mock(CyRow.class);
+ e2 = mock(CyEdge.class);
+ when(e2.attrs()).thenReturn(r2);
+
+ List<CyEdge> el = new ArrayList<CyEdge>();
+ el.add(e1);
+ el.add(e2);
+ when(net.getEdgeList()).thenReturn(el);
+
+ r3 = mock(CyRow.class);
+ e3 = mock(CyNode.class);
+ when(e3.attrs()).thenReturn(r3);
+
+ r4 = mock(CyRow.class);
+ e4 = mock(CyNode.class);
+ when(e4.attrs()).thenReturn(r4);
+
+ List<CyNode> nl = new ArrayList<CyNode>();
+ nl.add(e3);
+ nl.add(e4);
+ when(net.getNodeList()).thenReturn(nl);
}
}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AllFactoryTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AllFactoryTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/AllFactoryTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,133 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.task.NetworkTaskFactory;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.Task;
+
+public class AllFactoryTest {
+
+ CyNetworkManager netmgr;
+ CyNetwork net;
+
+ @Before
+ public void setUp() throws Exception {
+ net = mock(CyNetwork.class);
+ netmgr = mock(CyNetworkManager.class);
+ }
+
+ @Test
+ public void testDeselectAllEdgesTaskFactory() {
+ executeTest( new DeselectAllEdgesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testDeselectAllNodesTaskFactory() {
+ executeTest( new DeselectAllNodesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testDeselectAllTaskFactory() {
+ executeTest( new DeselectAllTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testInvertSelectedEdgesTaskFactory() {
+ executeTest( new InvertSelectedEdgesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testInvertSelectedNodesTaskFactory() {
+ executeTest( new InvertSelectedNodesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectAdjacentEdgesTaskFactory() {
+ executeTest( new SelectAdjacentEdgesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectAllEdgesTaskFactory() {
+ executeTest( new SelectAllEdgesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectAllNodesTaskFactory() {
+ executeTest( new SelectAllNodesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectAllTaskFactory() {
+ executeTest( new SelectAllTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectConnectedNodesTaskFactory() {
+ executeTest( new SelectConnectedNodesTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectFirstNeighborsTaskFactory() {
+ executeTest( new SelectFirstNeighborsTaskFactory(netmgr) );
+ }
+
+ @Test
+ public void testSelectFromFileListTaskFactory() {
+ executeTest( new SelectFromFileListTaskFactory(netmgr) );
+ }
+
+
+ private void executeTest(NetworkTaskFactory ntf) {
+ ntf.setNetwork(net);
+ TaskIterator ti = ntf.getTaskIterator();
+ assertNotNull(ti);
+ assertTrue( ti.hasNext() );
+ Task t = ti.next();
+ assertNotNull( t );
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactoryTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactoryTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactoryTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,74 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+
+public class DeselectAllEdgesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // run the task
+ Task t = new DeselectAllEdgesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r1, times(1)).set("selected",false);
+ verify(r2, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,74 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+
+public class DeselectAllEdgesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // run the task
+ Task t = new DeselectAllEdgesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r1, times(1)).set("selected",false);
+ verify(r2, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,74 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyNode;
+
+public class DeselectAllNodesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // run the task
+ Task t = new DeselectAllNodesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, times(1)).set("selected",false);
+ verify(r4, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/DeselectAllTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,77 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyNode;
+
+public class DeselectAllTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // run the task
+ Task t = new DeselectAllTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r1, times(1)).set("selected",false);
+ verify(r2, times(1)).set("selected",false);
+ verify(r3, times(1)).set("selected",false);
+ verify(r4, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,78 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+
+public class InvertSelectedEdgesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // more setup
+ when(r1.get("selected",Boolean.class)).thenReturn(false);
+ when(r2.get("selected",Boolean.class)).thenReturn(true);
+
+ // run the task
+ Task t = new InvertSelectedEdgesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r1, times(1)).set("selected",true);
+ verify(r2, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,78 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyNode;
+
+public class InvertSelectedNodesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // more setup
+ when(r3.get("selected",Boolean.class)).thenReturn(false);
+ when(r4.get("selected",Boolean.class)).thenReturn(true);
+
+ // run the task
+ Task t = new InvertSelectedNodesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, times(1)).set("selected",true);
+ verify(r4, times(1)).set("selected",false);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,80 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+
+public class SelectAdjacentEdgesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ when(r3.get("selected",Boolean.class)).thenReturn(true);
+ when(r4.get("selected",Boolean.class)).thenReturn(false);
+
+ List<CyEdge> el = new ArrayList<CyEdge>();
+ el.add(e1);
+
when(net.getAdjacentEdgeList(e3,CyEdge.Type.ANY)).thenReturn(el);
+
+ // run the task
+ Task t = new SelectAdjacentEdgesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r1, times(1)).set("selected",true);
+ }
+}
Modified:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskTest.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -63,22 +63,6 @@
@Test
public void testRun() throws Exception {
- // configure the mocks
- CyNetwork net = mock(CyNetwork.class);
-
- CyRow r1 = mock(CyRow.class);
- CyEdge e1 = mock(CyEdge.class);
- when(e1.attrs()).thenReturn(r1);
-
- CyRow r2 = mock(CyRow.class);
- CyEdge e2 = mock(CyEdge.class);
- when(e2.attrs()).thenReturn(r2);
-
- List<CyEdge> el = new ArrayList<CyEdge>();
- el.add(e1);
- el.add(e2);
- when(net.getEdgeList()).thenReturn(el);
-
// run the task
Task t = new SelectAllEdgesTask(net,netmgr);
t.run(tm);
Modified:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllNodesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllNodesTaskTest.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllNodesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -63,28 +63,12 @@
@Test
public void testRun() throws Exception {
- // configure the mocks
- CyNetwork net = mock(CyNetwork.class);
-
- CyRow r1 = mock(CyRow.class);
- CyNode e1 = mock(CyNode.class);
- when(e1.attrs()).thenReturn(r1);
-
- CyRow r2 = mock(CyRow.class);
- CyNode e2 = mock(CyNode.class);
- when(e2.attrs()).thenReturn(r2);
-
- List<CyNode> el = new ArrayList<CyNode>();
- el.add(e1);
- el.add(e2);
- when(net.getNodeList()).thenReturn(el);
-
// run the task
Task t = new SelectAllNodesTask(net,netmgr);
t.run(tm);
// check that the expected rows were set
- verify(r1, times(1)).set("selected",true);
- verify(r2, times(1)).set("selected",true);
+ verify(r3, times(1)).set("selected",true);
+ verify(r4, times(1)).set("selected",true);
}
}
Modified:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllTaskTest.java
2010-09-24 18:10:47 UTC (rev 22047)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectAllTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -64,36 +64,6 @@
@Test
public void testRun() throws Exception {
- // configure the mocks
- CyNetwork net = mock(CyNetwork.class);
-
- CyRow r1 = mock(CyRow.class);
- CyEdge e1 = mock(CyEdge.class);
- when(e1.attrs()).thenReturn(r1);
-
- CyRow r2 = mock(CyRow.class);
- CyEdge e2 = mock(CyEdge.class);
- when(e2.attrs()).thenReturn(r2);
-
- List<CyEdge> el = new ArrayList<CyEdge>();
- el.add(e1);
- el.add(e2);
- when(net.getEdgeList()).thenReturn(el);
-
- CyRow r3 = mock(CyRow.class);
- CyNode e3 = mock(CyNode.class);
- when(e3.attrs()).thenReturn(r3);
-
- CyRow r4 = mock(CyRow.class);
- CyNode e4 = mock(CyNode.class);
- when(e4.attrs()).thenReturn(r4);
-
- List<CyNode> nl = new ArrayList<CyNode>();
- nl.add(e3);
- nl.add(e4);
- when(net.getNodeList()).thenReturn(nl);
-
-
// run the task
Task t = new SelectAllTask(net,netmgr);
t.run(tm);
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,81 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+
+public class SelectConnectedNodesTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // more setup
+ when(r1.get("selected",Boolean.class)).thenReturn(true);
+ when(r2.get("selected",Boolean.class)).thenReturn(false);
+
+ when(e1.getSource()).thenReturn(e3);
+ when(e1.getTarget()).thenReturn(e4);
+
+ // run the task
+ Task t = new SelectConnectedNodesTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, times(1)).set("selected",true);
+ verify(r4, times(1)).set("selected",true);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,103 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.view.model.View;
+import org.cytoscape.view.model.CyNetworkView;
+
+public class SelectFirstNeighborsNodeViewTaskTest extends
AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // more setup
+ List<CyNode> nl = new ArrayList<CyNode>();
+ nl.add(e4);
+ when(e3.getNeighborList(CyEdge.Type.ANY)).thenReturn(nl);
+
+ View<CyNode> nv = (View<CyNode>)mock(View.class);
+ when(nv.getModel()).thenReturn(e3);
+ CyNetworkView netView = mock(CyNetworkView.class);
+
+ // run the task
+ Task t = new SelectFirstNeighborsNodeViewTask(nv,netView);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r4, times(1)).set("selected",true);
+ }
+
+ @Test(expected=NullPointerException.class)
+ public void testNullNetworkView() throws Exception {
+ View<CyNode> nv = (View<CyNode>)mock(View.class);
+
+ // run the task
+ Task t = new SelectFirstNeighborsNodeViewTask(nv,null);
+ t.run(tm);
+ }
+
+ @Test(expected=NullPointerException.class)
+ public void testNullNodeView() throws Exception {
+ CyNetworkView netView = mock(CyNetworkView.class);
+
+ // run the task
+ Task t = new SelectFirstNeighborsNodeViewTask(null, netView);
+ t.run(tm);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,82 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.CyEdge;
+
+public class SelectFirstNeighborsTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+ // more setup
+ when(r3.get("selected",Boolean.class)).thenReturn(true);
+ when(r4.get("selected",Boolean.class)).thenReturn(false);
+
+ List<CyNode> nl = new ArrayList<CyNode>();
+ nl.add(e4);
+ when(net.getNeighborList(e3, CyEdge.Type.ANY)).thenReturn(nl);
+
+ // run the task
+ Task t = new SelectFirstNeighborsTask(net,netmgr);
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r4, times(1)).set("selected",true);
+ }
+}
Added:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFromFileListTaskTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFromFileListTaskTest.java
(rev 0)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/select/SelectFromFileListTaskTest.java
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,122 @@
+/*
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+
+
+package org.cytoscape.task.internal.select;
+
+import static org.mockito.Mockito.*;
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+import java.util.List;
+import java.util.ArrayList;
+
+import org.cytoscape.session.CyNetworkManager;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.Task;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyNode;
+
+import java.io.File;
+
+public class SelectFromFileListTaskTest extends AbstractSelectTaskTester {
+
+
+ @Before
+ public void setUp() throws Exception {
+ super.setUp();
+ }
+
+ @Test
+ public void testRun() throws Exception {
+
+ when(r3.get("name",String.class)).thenReturn("homer");
+ when(r4.get("name",String.class)).thenReturn("marge");
+
+ // run the task
+ SelectFromFileListTask t = new
SelectFromFileListTask(net,netmgr);
+ t.file = new File("./src/test/resources/node_names.txt");
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, times(1)).set("selected",true);
+ verify(r4, times(1)).set("selected",true);
+ }
+
+ @Test(expected=NullPointerException.class)
+ public void testRunWithoutFileSpecified() throws Exception {
+ // run the task
+ SelectFromFileListTask t = new
SelectFromFileListTask(net,netmgr);
+ t.run(tm);
+ }
+
+ @Test(expected=Exception.class)
+ public void testNonExistantFile() throws Exception {
+ // run the task
+ SelectFromFileListTask t = new
SelectFromFileListTask(net,netmgr);
+ t.file = new File("./src/test/resources/does-not-exist.txt");
+ t.run(tm);
+ }
+
+ @Test
+ public void testRunEmptyFile() throws Exception {
+ // run the task
+ SelectFromFileListTask t = new
SelectFromFileListTask(net,netmgr);
+ t.file = new File("./src/test/resources/empty.txt");
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, never()).set("selected",true);
+ verify(r4, never()).set("selected",true);
+ }
+
+ @Test
+ public void testRunNamesDontMatch() throws Exception {
+ // run the task
+ SelectFromFileListTask t = new
SelectFromFileListTask(net,netmgr);
+ t.file = new File("./src/test/resources/bad_names.txt");
+ t.run(tm);
+
+ // check that the expected rows were set
+ verify(r3, never()).set("selected",true);
+ verify(r4, never()).set("selected",true);
+ }
+
+}
Added: core3/core-task-impl/trunk/src/test/resources/bad_names.txt
===================================================================
--- core3/core-task-impl/trunk/src/test/resources/bad_names.txt
(rev 0)
+++ core3/core-task-impl/trunk/src/test/resources/bad_names.txt 2010-09-24
19:29:47 UTC (rev 22048)
@@ -0,0 +1,5 @@
+bart
+lisa
+maggie
+
+
Added: core3/core-task-impl/trunk/src/test/resources/empty.txt
===================================================================
Added: core3/core-task-impl/trunk/src/test/resources/node_names.txt
===================================================================
--- core3/core-task-impl/trunk/src/test/resources/node_names.txt
(rev 0)
+++ core3/core-task-impl/trunk/src/test/resources/node_names.txt
2010-09-24 19:29:47 UTC (rev 22048)
@@ -0,0 +1,2 @@
+homer
+marge
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