See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/1099/changes>
Changes: [ruschein] Added a Param.SAVE_FILE flag for File tunables that need to be written out. ------------------------------------------ [...truncated 56 lines...] A pom.xml U . At revision 22123 Parsing POMs [INFO ] snapshot org.cytoscape:parent:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 56027 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-swing-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] snapshot org.cytoscape:work-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:work-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:work-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:work-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:work-swing-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:work-swing-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:work-swing-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:work-swing-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:work-spring-hack:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:work-spring-hack:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:work-spring-hack:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:work-spring-hack:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:property:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:property:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:property:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:property:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:io-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:io-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:io-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:io-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:model-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:model-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:model-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:event-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:event-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:event-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:viewmodel-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:viewmodel-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:viewmodel-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:viewmodel-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:vizmap-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:vizmap-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:vizmap-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:vizmap-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:session-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:session-api:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:session-api:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:session-api:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.cytoscape:integration-test-support:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:integration-test-support:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.cytoscape:integration-test-support:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.cytoscape:integration-test-support:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.springframework.osgi:log4j.osgi:1.2.15-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.springframework.osgi:log4j.osgi:1.2.15-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.springframework.osgi:log4j.osgi:1.2.15-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.springframework.osgi:log4j.osgi:1.2.15-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.springframework.osgi:log4j.osgi:1.2.15-SNAPSHOT: checking for updates from i21-s3-osgi-repo [INFO] snapshot org.springframework.osgi:osgi-repo:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.springframework.osgi:osgi-repo:1.0-SNAPSHOT: checking for updates from spring-osgified-artifacts [INFO] snapshot org.springframework.osgi:osgi-repo:1.0-SNAPSHOT: checking for updates from ops4j.releases [INFO] snapshot org.springframework.osgi:osgi-repo:1.0-SNAPSHOT: checking for updates from l2fprod-maven-repo [INFO] snapshot org.springframework.osgi:osgi-repo:1.0-SNAPSHOT: checking for updates from i21-s3-osgi-repo [INFO] [pax:compile] [INFO] Compiling 29 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work Swing Implementation/modules/org.cytoscape$work-swing-impl/builds/2010-10-01_13-00-48/archive/org.cytoscape/work-swing-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/StringHandler.java>:[8,-1] cannot access org.cytoscape.work.Tunable bad class file: org/cytoscape/work/Tunable.class(org/cytoscape/work:Tunable.class) unable to access file: corrupted zip file [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 35 seconds [INFO] Finished at: Fri Oct 01 13:01:26 EDT 2010 [INFO] Final Memory: 51M/491M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-swing-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.work-swing-impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 501 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 30 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 753 ms [INFO] Squid extraction... [INFO] Squid extraction done: 347 ms [INFO] Sensor SquidSensor done: 1181 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 76 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 28 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 348 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-swing-impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 29 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/classes> [INFO] [findbugs:findbugs] [INFO] Locale is en [java] The following classes needed for analysis were missing: [java] org.springframework.core.InfrastructureProxy [java] Warnings generated: 57 [java] Missing classes: 1 [INFO] Execute maven plugin findbugs-maven-plugin done: 22745 ms [INFO] Sensor FindbugsSensor... [INFO] Sensor FindbugsSensor done: 269 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/sonar/checkstyle-result.xml> [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 992 ms [INFO] Sensor CheckstyleSensor done: 1387 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 3595 ms [INFO] Sensor PmdSensor done: 4828 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-swing-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 62 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/generated-classes/cobertura> [cobertura] WARN [main] net.sourceforge.cobertura.instrument.ClassInstrumenter - No line number information found for class org.cytoscape.work.internal.tunables.InputStreamHandler$1. Perhaps you need to compile with debug=true? [cobertura] WARN [main] net.sourceforge.cobertura.instrument.ClassInstrumenter - No line number information found for class org.cytoscape.work.internal.tunables.URLHandler$1. Perhaps you need to compile with debug=true? Cobertura: Saved information on 62 classes. Instrument time: 1722ms [INFO] Instrumentation was successful. [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 1 source file to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/test-classes> [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- There are no tests to run. Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 62 classes. Report time: 1035ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 5491 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 971 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 490 ms [INFO] Execute maven plugin taglist-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-swing-impl [INFO] task-segment: [org.codehaus.mojo:taglist-maven-plugin:2.4:taglist] [INFO] ------------------------------------------------------------------------ [WARNING] DEPRECATED [tags]: No reason given [INFO] [taglist:taglist] [WARNING] Using legacy tag format. This is not recommended. [INFO] Execute maven plugin taglist-maven-plugin done: 1042 ms [INFO] Sensor org.sonar.plugins.taglist.taglistsen...@1310c2e8... [INFO] Sensor org.sonar.plugins.taglist.taglistsen...@1310c2e8 done: 47 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Swing%20Implementation/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 248 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar/ [INFO] Database optimization... [INFO] Database optimization done: 1656 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 56 seconds [INFO] Finished at: Fri Oct 01 13:02:33 EDT 2010 [INFO] Final Memory: 97M/775M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. 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