See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/1090/>
------------------------------------------ [...truncated 27 lines...] A src/integration/resources/log4j.properties A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/model A src/main/java/org/cytoscape/model/internal A src/main/java/org/cytoscape/model/internal/CyNetworkFactoryImpl.java A src/main/java/org/cytoscape/model/internal/ArrayGraph.java A src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java A src/main/java/org/cytoscape/model/internal/CyEdgeImpl.java A src/main/java/org/cytoscape/model/internal/CyNodeImpl.java A src/main/java/org/cytoscape/model/internal/CyRootNetworkFactoryImpl.java A src/main/java/org/cytoscape/model/internal/CyTableImpl.java A src/main/java/org/cytoscape/model/internal/EdgePointer.java A src/main/java/org/cytoscape/model/internal/NodePointer.java A src/main/java/org/cytoscape/model/internal/CyTableEntryImpl.java A src/main/java/org/cytoscape/model/internal/ArraySubGraph.java A src/main/java/org/cytoscape/model/internal/CyTableFactoryImpl.java A src/main/javadoc A src/main/javadoc/org A src/main/javadoc/org/cytoscape A src/main/javadoc/org/cytoscape/model A src/main/javadoc/org/cytoscape/model/subnetwork A src/main/javadoc/org/cytoscape/model/subnetwork/package.html A src/main/javadoc/org/cytoscape/model/events A src/main/javadoc/org/cytoscape/model/events/package.html A src/main/javadoc/org/cytoscape/model/package.html A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/readme.txt A pom.xml U . At revision 22133 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. no change for http://chianti.ucsd.edu/svn/core3/model-impl/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 33581 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Compiling 12 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/classes> [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 13 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model impl/modules/org.cytoscape$model-impl/builds/2010-10-01_20-12-47/archive/org.cytoscape/model-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/test/java/org/cytoscape/model/GraphObjectTest.java>:[44,-1] cannot access org.cytoscape.model.AbstractGraphObjectTest bad class file: org/cytoscape/model/AbstractGraphObjectTest.class(org/cytoscape/model:AbstractGraphObjectTest.class) unable to access file: corrupted zip file [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Fri Oct 01 20:12:56 EDT 2010 [INFO] Final Memory: 61M/476M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.model-impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 496 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 52 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 683 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 216 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 8 ms [INFO] Squid extraction done: 360 ms [INFO] Sensor SquidSensor done: 1335 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 46 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 224 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [findbugs:findbugs] [INFO] Locale is en [java] Warnings generated: 1 [INFO] Execute maven plugin findbugs-maven-plugin done: 14104 ms [INFO] Sensor FindbugsSensor... [INFO] Sensor FindbugsSensor done: 184 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/sonar/checkstyle-result.xml> [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 686 ms [INFO] Sensor CheckstyleSensor done: 863 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 2671 ms [INFO] Sensor PmdSensor done: 2790 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 15 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 15 classes. Instrument time: 294ms [INFO] Instrumentation was successful. [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 13 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/test-classes> [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.model.CyEdgeTest Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.123 sec Running org.cytoscape.model.CyNodeTest Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.218 sec Running org.cytoscape.model.CyTableManagerTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.model.TestCyNetworkFactory Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec Running org.cytoscape.model.GraphObjectTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec Running org.cytoscape.model.subnetwork.CySubNetworkCyNetworkTest Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.123 sec Running org.cytoscape.model.IdentifiableTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec Running org.cytoscape.model.CyDataTableTest Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 sec Running org.cytoscape.model.subnetwork.CySubNetworkTest Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.063 sec Running org.cytoscape.model.CyNetworkTest Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 sec Running org.cytoscape.model.subnetwork.CyRootNetworkCyNetworkTest Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec Running org.cytoscape.model.subnetwork.CyRootNetworkTest Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.054 sec Results : Tests run: 175, Failures: 0, Errors: 0, Skipped: 0 [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 15 classes. Report time: 603ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 5343 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 236 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 147 ms [INFO] Execute maven plugin taglist-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.mojo:taglist-maven-plugin:2.4:taglist] [INFO] ------------------------------------------------------------------------ [WARNING] DEPRECATED [tags]: No reason given [INFO] [taglist:taglist] [WARNING] Using legacy tag format. This is not recommended. [INFO] Execute maven plugin taglist-maven-plugin done: 4010 ms [INFO] Sensor org.sonar.plugins.taglist.taglistsen...@1e5b04ae... [INFO] Sensor org.sonar.plugins.taglist.taglistsen...@1e5b04ae done: 69 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 224 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar/ [INFO] Database optimization... [INFO] Database optimization done: 1614 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 40 seconds [INFO] Finished at: Fri Oct 01 20:13:48 EDT 2010 [INFO] Final Memory: 93M/780M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. 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