See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/1150/changes>
Changes: [mes] changed createColumn syntax for CyTable [mes] removed more for getUniqueColumns [mes] removed getUniqueColumns ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/model-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/model A src/test/java/org/cytoscape/model/IdentifiableTest.java A src/test/java/org/cytoscape/model/CyEdgeTest.java A src/test/java/org/cytoscape/model/CyNodeTest.java A src/test/java/org/cytoscape/model/subnetwork A src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkCyNetworkTest.java A src/test/java/org/cytoscape/model/subnetwork/CySubNetworkTest.java A src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyNetworkTest.java A src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkTest.java A src/test/java/org/cytoscape/model/CyNetworkTest.java A src/test/java/org/cytoscape/model/GraphObjectTest.java A src/test/java/org/cytoscape/model/CyDataTableTest.java A src/test/java/org/cytoscape/model/TestCyNetworkFactory.java A src/test/java/org/cytoscape/model/CyTableManagerTest.java A src/integration A src/integration/java A src/integration/java/integration A src/integration/java/integration/ITSpringIntegration.java A src/integration/resources A src/integration/resources/log4j.properties A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/model A src/main/java/org/cytoscape/model/internal A src/main/java/org/cytoscape/model/internal/CyNetworkFactoryImpl.java A src/main/java/org/cytoscape/model/internal/ArrayGraph.java A src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java A src/main/java/org/cytoscape/model/internal/CyEdgeImpl.java A src/main/java/org/cytoscape/model/internal/CyNodeImpl.java A src/main/java/org/cytoscape/model/internal/CyRootNetworkFactoryImpl.java A src/main/java/org/cytoscape/model/internal/CyTableImpl.java A src/main/java/org/cytoscape/model/internal/EdgePointer.java A src/main/java/org/cytoscape/model/internal/NodePointer.java A src/main/java/org/cytoscape/model/internal/CyTableEntryImpl.java A src/main/java/org/cytoscape/model/internal/ArraySubGraph.java A src/main/java/org/cytoscape/model/internal/CyTableFactoryImpl.java A src/main/javadoc A src/main/javadoc/org A src/main/javadoc/org/cytoscape A src/main/javadoc/org/cytoscape/model A src/main/javadoc/org/cytoscape/model/subnetwork A src/main/javadoc/org/cytoscape/model/subnetwork/package.html A src/main/javadoc/org/cytoscape/model/events A src/main/javadoc/org/cytoscape/model/events/package.html A src/main/javadoc/org/cytoscape/model/package.html A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/readme.txt A pom.xml U . At revision 22405 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 55221 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Compiling 12 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model impl/modules/org.cytoscape$model-impl/builds/2010-10-25_19-02-58/archive/org.cytoscape/model-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[126,41] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.String>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[127,41] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.Boolean>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[135,42] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.String>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[136,42] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.Boolean>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[142,42] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.String>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[143,42] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.Boolean>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/ArrayGraph.java>:[144,42] <T>createColumn(java.lang.String,java.lang.Class<? extends T>,boolean) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<java.lang.String>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/src/main/java/org/cytoscape/model/internal/CyTableImpl.java>:[55,7] org.cytoscape.model.internal.CyTableImpl is not abstract and does not override abstract method getUniqueColumns() in org.cytoscape.model.CyTable [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5 seconds [INFO] Finished at: Mon Oct 25 19:03:06 EDT 2010 [INFO] Final Memory: 50M/493M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.model-impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 436 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 35 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 1080 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/model/internal/ArrayGraph$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/EdgePointer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/NodePointer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl$InternalRow' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/EdgePointer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/NodePointer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArrayGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl$InternalRow' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableFactoryImpl' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 741 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 6 ms [INFO] Squid extraction done: 212 ms [INFO] Sensor SquidSensor done: 2089 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 175 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] [pax:compile] [INFO] Compiling 7 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12 seconds [INFO] Finished at: Mon Oct 25 19:03:30 EDT 2010 [INFO] Final Memory: 72M/721M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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