Author: kono
Date: 2010-10-26 13:24:47 -0700 (Tue, 26 Oct 2010)
New Revision: 22472
Added:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/package-info.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/package-info.java
core3/vizmap-api/trunk/src/test/java/org/cytoscape/view/vizmap/VizmapEventsTest.java
Removed:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsListener.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyListener.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedListener.java
Modified:
core3/vizmap-api/trunk/pom.xml
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunction.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingManager.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyle.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyleFactory.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedListener.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedEvent.java
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedListener.java
core3/vizmap-gui-impl/trunk/src/main/java/org/cytoscape/view/vizmap/gui/internal/AbstractVizMapperPanel.java
core3/vizmap-impl/trunk/src/main/java/org/cytoscape/view/vizmap/internal/VisualMappingManagerImpl.java
cytoscape3/trunk/application/src/main/java/cytoscape/internal/dialogs/PreferencesDialogImpl.java
Log:
vizmap-api bundle cleaned up. Tests and documents had been added.
Modified: core3/vizmap-api/trunk/pom.xml
===================================================================
--- core3/vizmap-api/trunk/pom.xml 2010-10-26 20:21:37 UTC (rev 22471)
+++ core3/vizmap-api/trunk/pom.xml 2010-10-26 20:24:47 UTC (rev 22472)
@@ -135,6 +135,12 @@
<scope>test</scope>
</dependency>
<dependency>
+ <groupId>org.easymock</groupId>
+ <artifactId>easymock</artifactId>
+ <version>${easymock.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
<groupId>org.cytoscape</groupId>
<artifactId>presentation-api</artifactId>
<version>1.0-SNAPSHOT</version>
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunction.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunction.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunction.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -31,73 +31,73 @@
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
+ */
package org.cytoscape.view.vizmap;
import org.cytoscape.model.CyTableEntry;
import org.cytoscape.view.model.View;
import org.cytoscape.view.model.VisualProperty;
-
/**
* This class defines how an attribute gets mapped to a visual property.<br />
*
* It takes two values:
* <ul>
- * <li>Attribute value: node name(Strings), expression values(Numbers),
...</li>
- * <li>Visual Property: node size(Numbers), edge color(Color), node
shape(NodeShape), ...</li>
+ * <li>Attribute value: node name(Strings), expression values(Numbers),
...</li>
+ * <li>Visual Property: node size(Numbers), edge color(Color), node
+ * shape(NodeShape), ...</li>
* </ul>
*
- * This provides the mapping function from converting the attribute to the
visual
- * property. Essentially, this is a map using <K> as the key and <V> as the
value.
- *
- * The direction of mapping is ALWAYS:<br />
+ * This provides the mapping function from converting the attribute to the
+ * visual property. Essentially, this is a map using <K> as the key and <V> as
+ * the value.
*
+ * The direction of mapping is ALWAYS:
+ *
+ * <p>
* K(Attribute) ---> V(Visual Property)
+ * </p>
*
* K will be used in implementations.
*
- * @param <K> Attribute value object type. This is the key of this mapping
(Can be any objects)
- * @param <V> Visual property value type. (can be any type)
+ * @param <K>
+ * Attribute object type. This is the key of mapping (Can
+ * be any objects)
+ * @param <V>
+ * Visual property value type. (can be any type)
*
*/
public interface VisualMappingFunction<K, V> {
-
-
+
/**
- * Returns attribute name used in this mapping.
- * This field is immutable.
- *
- * @return DOCUMENT ME!
+ * Returns attribute name used in this mapping. This field is immutable.
+ *
+ * @return name of attribute (a column name in data table) associated
with
+ * this mapping.
*/
String getMappingAttributeName();
-
-
+
/**
* Returns data type of mapping attribute.
*
- * @return
+ * @return data type of controlling attribute.
*/
Class<K> getMappingAttributeType();
-
/**
- * Visual Property associated with this function.
- * This field is immutable.
- *
- * @return DOCUMENT ME!
+ * Visual Property associated with this function. This field is
immutable.
+ *
+ * @return {...@linkplain VisualProperty} used in this mapping.
*/
VisualProperty<V> getVisualProperty();
-
/**
- * Since current MappingFunctions map from Attributes to
- * VisualProperties, have to restrict View<?> to those
- * generic types that have CyAttributes; currently this is
- * CyTableEntry.
+ * Apply mapping to the view model. Once this method is called,
Cytoscape
+ * updates the view model and fires proper events.
*
- * @param column DOCUMENT ME!
- * @param views DOCUMENT ME!
+ * @param view
+ * target View model to be updated. View should be one of the
+ * following: Node, Edge, or Network.
*/
void apply(final View<? extends CyTableEntry> view);
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -2,18 +2,26 @@
import org.cytoscape.view.model.VisualProperty;
+/**
+ * Factory for {...@linkplain VisualMappingFunction}s. Implementation of this
will
+ * be provided as an service. One mapping type should have one factory.
+ *
+ */
public interface VisualMappingFunctionFactory {
-
+
/**
- * Create a new VisualMapping Function.
+ * Create a new {...@linkplain VisualMappingFunction}.
*
- * @param <K>
- * @param <V>
- * @param functionType
- * @param attrValueType
- * @param attributeName
- * @param vp
- * @return
+ * @param <K> Data type of controlling attribute.
+ * @param <V> Data type of {...@linkplain VisualProperty}, such as
{...@linkplain Color}, {...@linkplain String}, etc.
+ *
+ * @param attributeName Controlling attribute name. This is a name of
the column in a data table.
+ * @param attrValueType Data type of controlling attribute.
+ * @param vp {...@linkplain VisualProperty} used in the new mapping
+ *
+ * @return new VisualMappingFunction.
*/
- <K, V> VisualMappingFunction<K, V> createVisualMappingFunction(final
String attributeName, final Class<K> attrValueType, final VisualProperty<V> vp);
+ <K, V> VisualMappingFunction<K, V> createVisualMappingFunction(
+ final String attributeName, final Class<K>
attrValueType,
+ final VisualProperty<V> vp);
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingManager.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingManager.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualMappingManager.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,4 +1,3 @@
-
/*
Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
@@ -32,70 +31,57 @@
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
+ */
package org.cytoscape.view.vizmap;
+import java.util.Properties;
import java.util.Set;
import org.cytoscape.view.model.CyNetworkView;
-
/**
- * Managing mapping from View --> Visual Style.
- * Also, this class manages list of all available Visual Styles.
- * Creation/deletion of VS is a function of this class.
- *
- * @author abeld
- * @author kono
+ * Manager for {...@linkplain Visual Style}s. This object manages mapping from
view
+ * model to VisualStyle. User objects can access all VisualStyles and
+ * VisualMappingFunctions through this class.
*
- * @since Cytoscape 3.0
- *
+ * <p>
+ * Add/Remove operations will be done through events. For more information,
read
+ * JavaDoc for {...@linkplain VisualStyleCreatedEvent} and
+ * {...@linkplain VisualStyleDestroyedEvent}.
+ * </p>
+ *
*/
public interface VisualMappingManager {
-
+
/**
- * Set a Visual Style to the target view
- *
- * @param vs Visual Style to be set.
- * @param nv Target network view
+ * Set a {...@linkplain VisualStyle} to the target network view model.
+ *
+ * @param vs
+ * Visual Style to be set.
+ * @param nv
+ * Target network view
*/
- void setVisualStyle(final VisualStyle visualStyle, final CyNetworkView
networkViewModel);
-
+ void setVisualStyle(final VisualStyle visualStyle,
+ final CyNetworkView networkViewModel);
/**
- * Returns the associated Visual Style for the target view.
- *
- * @param nv Target network view
- *
- * @return Associated Visual Style for the view.
+ * Returns the {...@linkplain VisualStyle} associated with the target
network
+ * view model.
+ *
+ * @param networkViewModel
+ * Target network view
+ *
+ * @return VisualStyle associated with the network view model.
*/
VisualStyle getVisualStyle(final CyNetworkView networkViewModel);
-
/**
- * Returns all available Visual Styles managed by this object.
- *
- * @return Collection of all available Visual Styles.
+ * Returns all available {...@linkplain VisualStyle}s managed by this
object.
*
- */
- Set<VisualStyle> getAllVisualStyles();
-
-
- /**
- * Add a new style to manager
- *
- * @param vs
- */
- void addVisualStyle(final VisualStyle visualStyle);
-
-
- /**
- * Remove a Visual Style.
- *
- * @param vs Visual Style to be removed.
+ * @return Set of all registered VisualStyles.
*
*/
- void removeVisualStyle(final VisualStyle visualStyle);
+ Set<VisualStyle> getAllVisualStyles();
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyle.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyle.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyle.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -42,8 +42,8 @@
/**
- * A VisualStyle is a collection of VisualMappingFunctions and default values
- * that defines how a set of attributes modify visual properties of a View
object.
+ * A VisualStyle is a collection of {...@linkplain VisualMappingFunction}s and
default values
+ * that define how a set of attributes is mapped to visual properties of View
objects.
*
*/
public interface VisualStyle {
@@ -52,7 +52,8 @@
* Returns name of this visual style. This should NOT be used as the ID
of this
* Visual Style. Just for GUI components and may not be unique.
*
- * Title of Visual Style is a mutable field.
+ * <p>
+ * Title of Visual Style is a mutable field and may
<strong>NOT</strong> be unique.
*
* @return title of this visual style
*/
@@ -60,88 +61,92 @@
/**
- * Set new title of this VS.
- * Will be used by rename function.
+ * Set new title for this VisualStyle.
*
- * @param title New title.
+ * @param title New title of this VisualStyle.
*/
void setTitle(final String title);
/**
- * Add a new mapping for this Visual Style.
+ * Add a new {...@linkplain VisualMappingFunction} to this VisualStyle.
*
- * @param mapping new mapping.
+ * @param mapping new VisualMappingFunction to be added.
*/
void addVisualMappingFunction(final VisualMappingFunction<?, ?>
mapping);
/**
- * Remove a mapping for Visual Property.
+ * Remove a VisualMappingFunction for the VisualProperty.
* One visual property can be associated with only one mapping
function,
- * so this always removes correct mapping.
+ * so this always removes correct one.
*
- * @param vp mapping associated with this vp will be removed.
+ * @param vp VisualMappingFunction associated with this VisualProperty
will be removed.
*
*/
void removeVisualMappingFunction(final VisualProperty<?> vp);
/**
- * get current mapping for the Visual Property vp.
+ * Get current {...@linkplain VisualMappingFunction} for the
VisualProperty.
*
- * @param <V> Type of visual property.
+ * @param <V> Data type of VisualProperty.
+ *
* @param vp visual property associated with the target mapping.
*
- * @return mapping function for vp
+ * @return mapping function for the VisualProperty. If no mapping is
available, this value is null.
*
*/
<V> VisualMappingFunction<?, V> getVisualMappingFunction(final
VisualProperty<V> vp);
/**
- * Returns all available mappings.
+ * Returns all {...@linkplain VisualMappingFunction}s in this style.
*
- * @return All visual mappings for this style.
+ * @return All mappings for this style.
*/
Collection<VisualMappingFunction<?, ?>> getAllVisualMappingFunctions();
/**
- * Returns default value for the Visual Property vp.
- * This is style's default value. Not same as VP's default.
+ * Returns default value for the VisualProperty.
+ * This is style's default value, not same as VisualProperty default.
+ * If VisualMappingFunction is not available for this VisualProperty,
this default value will be used in the view model.
*
- * @param <V> Type of object associated with vp
- * @param vp target visual property
+ * @param <V> Data type of VisualProperty
+ *
+ * @param vp target VisualProperty
*
- * @return Style's default value for vp
+ * @return Style's default value for the VisualProperty.
*/
<V> V getDefaultValue(final VisualProperty<V> vp);
/**
- * Setter for the default value of vp.
+ * Set default value for the VisualProperty.
*
- * @param <V> Type of object associated with vp
- * @param vp target visual property
+ * @param <V> Data type of VisualProperty
+ * @param <S> Data type of actual default value. This can be same as V
or its child classes.
+ *
+ * @param vp target VisualProperty
* @param value Value to be set as default. This can be child type of
V. For example,
* if V is Number, S can be Double,
Integer, etc.
*/
- <V, S extends V> void setDefaultValue(final VisualProperty<V> vp, S
value);
+ <V, S extends V> void setDefaultValue(final VisualProperty<V> vp, final
S value);
/**
- * Apply this visual style to the view.
- * Currently this is only for network view.
- *
- * @param v Visual Style will be applied to this network view.
+ * Apply this style to the network view model.
+ *
+ * @param networkViewModel target view model to be updated.
*/
void apply(final CyNetworkView networkViewModel);
/**
- * A Visual Style is always associated with a lexicon tree provided
- * by a rendering engine. This method returns its associated lexicon.
+ * A VisualStyle is always associated with a lexicon tree provided
+ * by a {...@linkplain RenderingEngine}. This method returns the
associated lexicon.
+ * VisualLexicon is immutable.
*
* @return VisualLexicon provided by a rendering engine.
*/
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyleFactory.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyleFactory.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/VisualStyleFactory.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -2,27 +2,33 @@
import org.cytoscape.view.model.VisualLexicon;
+/**
+ * Factory for {...@linkplain VisualStyle}s. This object will be provided as
an OSGi service.
+ *
+ */
public interface VisualStyleFactory {
/**
- * Create a new Visual Style.
+ * Create a new {...@linkplain VisualStyle}.
*
* @param title Title of the visual style. This can be null, but in
that case,
* default title will be used.
* Note: This is NOT an identifier of this object,
just a title.
+ * @param lexicon VisualLexicon for the new style.
*
- * @return New Visual Style
+ * @return New VisualStyle object.
*/
VisualStyle createVisualStyle(final String title, final VisualLexicon
lexicon);
/**
- * Create a copy of given Visual Style.
+ * Create a copy of given {...@linkplain VisualStyle}.
*
* @param original
- * VS to be copied from.
+ * VisualStyle to be copied from.
*
- * @return Copied VS
+ * @return New VisualStyle copied from the original.
+ *
*/
VisualStyle createVisualStyle(final VisualStyle original);
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,13 +0,0 @@
-
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.AbstractCyEvent;
-
-/**
- *
- */
-public final class SaveVizmapPropsEvent extends AbstractCyEvent<Object> {
- public SaveVizmapPropsEvent(final Object source) {
- super(source, SaveVizmapPropsListener.class);
- }
-}
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/SaveVizmapPropsListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,11 +0,0 @@
-
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.CyListener;
-
-/**
- *
- */
-public interface SaveVizmapPropsListener extends CyListener {
- public void handleEvent(SaveVizmapPropsEvent e);
-}
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,49 +0,0 @@
-/*
- Copyright (c) 2008, The Cytoscape Consortium (www.cytoscape.org)
-
- The Cytoscape Consortium is:
- - Institute for Systems Biology
- - University of California San Diego
- - Memorial Sloan-Kettering Cancer Center
- - Institut Pasteur
- - Agilent Technologies
-
- This library is free software; you can redistribute it and/or modify it
- under the terms of the GNU Lesser General Public License as published
- by the Free Software Foundation; either version 2.1 of the License, or
- any later version.
-
- This library is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
- documentation provided hereunder is on an "as is" basis, and the
- Institute for Systems Biology and the Whitehead Institute
- have no obligations to provide maintenance, support,
- updates, enhancements or modifications. In no event shall the
- Institute for Systems Biology and the Whitehead Institute
- be liable to any party for direct, indirect, special,
- incidental or consequential damages, including lost profits, arising
- out of the use of this software and its documentation, even if the
- Institute for Systems Biology and the Whitehead Institute
- have been advised of the possibility of such damage. See
- the GNU Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with this library; if not, write to the Free Software Foundation,
- Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.AbstractCyEvent;
-
-import org.cytoscape.view.vizmap.VisualStyle;
-
-
-/**
- * DOCUMENT ME!
- */
-public final class VisualStyleAboutToDestroyEvent extends
AbstractCyEvent<VisualStyle> {
- public VisualStyleAboutToDestroyEvent(final VisualStyle source) {
- super(source, VisualStyleAboutToDestroyListener.class);
- }
-}
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToDestroyListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,49 +0,0 @@
-/*
- Copyright (c) 2008, The Cytoscape Consortium (www.cytoscape.org)
-
- The Cytoscape Consortium is:
- - Institute for Systems Biology
- - University of California San Diego
- - Memorial Sloan-Kettering Cancer Center
- - Institut Pasteur
- - Agilent Technologies
-
- This library is free software; you can redistribute it and/or modify it
- under the terms of the GNU Lesser General Public License as published
- by the Free Software Foundation; either version 2.1 of the License, or
- any later version.
-
- This library is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
- documentation provided hereunder is on an "as is" basis, and the
- Institute for Systems Biology and the Whitehead Institute
- have no obligations to provide maintenance, support,
- updates, enhancements or modifications. In no event shall the
- Institute for Systems Biology and the Whitehead Institute
- be liable to any party for direct, indirect, special,
- incidental or consequential damages, including lost profits, arising
- out of the use of this software and its documentation, even if the
- Institute for Systems Biology and the Whitehead Institute
- have been advised of the possibility of such damage. See
- the GNU Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with this library; if not, write to the Free Software Foundation,
- Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.CyListener;
-
-
-/**
- * Listener for VisualStyleAboutToDestroyEvent.
- */
-public interface VisualStyleAboutToDestroyListener extends CyListener {
- /**
- * DOCUMENT ME!
- * @param e DOCUMENT ME!
- */
- void handleEvent(VisualStyleAboutToDestroyEvent e);
-}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -40,9 +40,11 @@
/**
- * DOCUMENT ME!
+ * TODO: Is this necessary?
+ *
*/
public final class VisualStyleChangedEvent extends
AbstractCyEvent<VisualStyle> {
+
public VisualStyleChangedEvent(final VisualStyle source) {
super(source, VisualStyleChangedListener.class);
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -42,7 +42,8 @@
*/
public interface VisualStyleChangedListener extends CyListener {
/**
- * DOCUMENT ME!
+ * TODO: is this necessary?
+ *
* @param e DOCUMENT ME!
*/
void handleEvent(VisualStyleChangedEvent e);
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -38,19 +38,30 @@
import org.cytoscape.view.vizmap.VisualStyle;
/**
- * DOCUMENT ME!
+ * When {...@linkplain VisualStyleFactory} creates a new {...@linkplain
VisualStyle}
+ * object, it should fire this event.
+ *
*/
public final class VisualStyleCreatedEvent extends AbstractCyEvent<Object> {
private final VisualStyle created;
- public VisualStyleCreatedEvent(final Object source, final VisualStyle
created) {
+ /**
+ * Creates an event for the newly created style.
+ *
+ * @param source this is usually the {...@linkplain VisualStyleFactory}.
+ * @param created the new VisualStyle
+ */
+ public VisualStyleCreatedEvent(final Object source,
+ final VisualStyle created) {
super(source, VisualStyleCreatedListener.class);
this.created = created;
}
+
/**
- * Get the newly created Visual Style by the Visual Mapping Manager.
- * @return
+ * Get the newly created VisualStyle.
+ *
+ * @return new VisualStyle
*/
public VisualStyle getCreatedVisualStyle() {
return created;
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleCreatedListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -31,19 +31,22 @@
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
+ */
package org.cytoscape.view.vizmap.events;
import org.cytoscape.event.CyListener;
-
/**
- * Listener for VisualStyleCreatedEvent.
+ * Listener for {...@linkplain VisualStyleCreatedEvent}.
*/
public interface VisualStyleCreatedListener extends CyListener {
+
/**
- * DOCUMENT ME!
- * @param e DOCUMENT ME!
+ * Do something with a new {...@linkplain VisualStyle}. Usually, GUI
components
+ * and managers executes this method to update their states.
+ *
+ * @param e
+ * event contains new {...@linkplain VisualStyle} object.
*/
- void handleEvent(VisualStyleCreatedEvent e);
+ void handleEvent(final VisualStyleCreatedEvent e);
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -38,17 +38,32 @@
import org.cytoscape.view.vizmap.VisualStyle;
/**
- * DOCUMENT ME!
+ * This event will be fired when {...@linkplain VisualStyle} object is deleted
from
+ * {...@linkplain VisualMappingManager}.
*/
public final class VisualStyleDestroyedEvent extends AbstractCyEvent<Object> {
private final VisualStyle destroyed;
- public VisualStyleDestroyedEvent(final Object source, final VisualStyle
destroyed) {
+ /**
+ * create an event for the deleted VisualStyle.
+ *
+ * @param source Usually this is the {...@linkplain
VisualMappingManager}.
+ * @param destroyed VisualStyle to be deleted.
+ */
+ public VisualStyleDestroyedEvent(final Object source,
+ final VisualStyle destroyed) {
super(source, VisualStyleDestroyedListener.class);
this.destroyed = destroyed;
}
+
+ /**
+ * Returns deleted VisualStyle.
+ *
+ * @return VisualStyle just deleted.
+ *
+ */
public VisualStyle getDestroyedVisualStyle() {
return destroyed;
}
Modified:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleDestroyedListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -31,19 +31,21 @@
You should have received a copy of the GNU Lesser General Public License
along with this library; if not, write to the Free Software Foundation,
Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
+ */
package org.cytoscape.view.vizmap.events;
import org.cytoscape.event.CyListener;
-
/**
- * Listener for VisualStyleDestroyedEvent.
+ * Listener for {...@linkplain VisualStyleDestroyedEvent}.
*/
public interface VisualStyleDestroyedListener extends CyListener {
+
/**
- * DOCUMENT ME!
- * @param e DOCUMENT ME!
+ * Update states/GUI using deleted {...@linkplain VisualStyle}
information.
+ *
+ * @param e
+ * Event containing deleted VisualStyle.
*/
void handleEvent(VisualStyleDestroyedEvent e);
}
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedEvent.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedEvent.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedEvent.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,60 +0,0 @@
-/*
- Copyright (c) 2008, The Cytoscape Consortium (www.cytoscape.org)
-
- The Cytoscape Consortium is:
- - Institute for Systems Biology
- - University of California San Diego
- - Memorial Sloan-Kettering Cancer Center
- - Institut Pasteur
- - Agilent Technologies
-
- This library is free software; you can redistribute it and/or modify it
- under the terms of the GNU Lesser General Public License as published
- by the Free Software Foundation; either version 2.1 of the License, or
- any later version.
-
- This library is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
- documentation provided hereunder is on an "as is" basis, and the
- Institute for Systems Biology and the Whitehead Institute
- have no obligations to provide maintenance, support,
- updates, enhancements or modifications. In no event shall the
- Institute for Systems Biology and the Whitehead Institute
- be liable to any party for direct, indirect, special,
- incidental or consequential damages, including lost profits, arising
- out of the use of this software and its documentation, even if the
- Institute for Systems Biology and the Whitehead Institute
- have been advised of the possibility of such damage. See
- the GNU Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with this library; if not, write to the Free Software Foundation,
- Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.AbstractCyEvent;
-
-import org.cytoscape.view.model.CyNetworkView;
-
-import org.cytoscape.view.vizmap.VisualStyle;
-
-
-/**
- * DOCUMENT ME!
- */
-public final class VisualStyleSwitchedEvent extends
AbstractCyEvent<CyNetworkView> {
- private final VisualStyle newVS;
- public VisualStyleSwitchedEvent(final CyNetworkView source, final
VisualStyle newVS) {
- super(source, VisualStyleSwitchedListener.class);
- this.newVS = newVS;
- }
- /**
- * DOCUMENT ME!
- * @return the new VisualStyle
- */
- public VisualStyle getNewVisualStyle() {
- return newVS;
- }
-}
Deleted:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedListener.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedListener.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSwitchedListener.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -1,49 +0,0 @@
-/*
- Copyright (c) 2008, The Cytoscape Consortium (www.cytoscape.org)
-
- The Cytoscape Consortium is:
- - Institute for Systems Biology
- - University of California San Diego
- - Memorial Sloan-Kettering Cancer Center
- - Institut Pasteur
- - Agilent Technologies
-
- This library is free software; you can redistribute it and/or modify it
- under the terms of the GNU Lesser General Public License as published
- by the Free Software Foundation; either version 2.1 of the License, or
- any later version.
-
- This library is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
- documentation provided hereunder is on an "as is" basis, and the
- Institute for Systems Biology and the Whitehead Institute
- have no obligations to provide maintenance, support,
- updates, enhancements or modifications. In no event shall the
- Institute for Systems Biology and the Whitehead Institute
- be liable to any party for direct, indirect, special,
- incidental or consequential damages, including lost profits, arising
- out of the use of this software and its documentation, even if the
- Institute for Systems Biology and the Whitehead Institute
- have been advised of the possibility of such damage. See
- the GNU Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with this library; if not, write to the Free Software Foundation,
- Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
-*/
-package org.cytoscape.view.vizmap.events;
-
-import org.cytoscape.event.CyListener;
-
-
-/**
- * Listener for VisualStyleSwitchedEvent.
- */
-public interface VisualStyleSwitchedListener extends CyListener {
- /**
- * DOCUMENT ME!
- * @param e DOCUMENT ME!
- */
- void handleEvent(VisualStyleSwitchedEvent e);
-}
Added:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/package-info.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/package-info.java
(rev 0)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/events/package-info.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -0,0 +1,6 @@
+/**
+ * Events for Visual Mappings.
+ *
+ */
+package org.cytoscape.view.vizmap.events;
+
Added:
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/package-info.java
===================================================================
---
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/package-info.java
(rev 0)
+++
core3/vizmap-api/trunk/src/main/java/org/cytoscape/view/vizmap/package-info.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -0,0 +1,6 @@
+/**
+ * Visual Mapping basic API module.
+ *
+ */
+package org.cytoscape.view.vizmap;
+
Added:
core3/vizmap-api/trunk/src/test/java/org/cytoscape/view/vizmap/VizmapEventsTest.java
===================================================================
---
core3/vizmap-api/trunk/src/test/java/org/cytoscape/view/vizmap/VizmapEventsTest.java
(rev 0)
+++
core3/vizmap-api/trunk/src/test/java/org/cytoscape/view/vizmap/VizmapEventsTest.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -0,0 +1,50 @@
+package org.cytoscape.view.vizmap;
+
+
+import org.cytoscape.view.vizmap.events.VisualStyleChangedEvent;
+import org.cytoscape.view.vizmap.events.VisualStyleCreatedEvent;
+import org.cytoscape.view.vizmap.events.VisualStyleDestroyedEvent;
+import org.junit.After;
+import org.junit.Before;
+import org.junit.Test;
+
+import static org.easymock.EasyMock.*;
+import static org.junit.Assert.*;
+
+public class VizmapEventsTest {
+
+ private VisualStyle style;
+ private VisualStyleFactory factory;
+
+ @Before
+ public void setUp() throws Exception {
+ style = createMock(VisualStyle.class);
+ factory = createMock(VisualStyleFactory.class);
+ }
+
+ @After
+ public void tearDown() throws Exception {
+ }
+
+ @Test
+ public void testVisualStyleCreatedEvent() {
+ final VisualStyleCreatedEvent event = new
VisualStyleCreatedEvent(factory, style);
+ assertNotNull(event);
+ assertEquals(style, event.getCreatedVisualStyle());
+ }
+
+ @Test
+ public void testVisualStyleDestroyedEvent() {
+ final VisualStyleDestroyedEvent event = new
VisualStyleDestroyedEvent(factory, style);
+ assertNotNull(event);
+ assertEquals(style, event.getDestroyedVisualStyle());
+ }
+
+ @Test
+ public void testVisualStyleChangedEvent() {
+ final VisualStyleChangedEvent event = new
VisualStyleChangedEvent(style);
+ assertNotNull(event);
+ assertEquals(style, event.getSource());
+ }
+
+}
Modified:
core3/vizmap-gui-impl/trunk/src/main/java/org/cytoscape/view/vizmap/gui/internal/AbstractVizMapperPanel.java
===================================================================
---
core3/vizmap-gui-impl/trunk/src/main/java/org/cytoscape/view/vizmap/gui/internal/AbstractVizMapperPanel.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-gui-impl/trunk/src/main/java/org/cytoscape/view/vizmap/gui/internal/AbstractVizMapperPanel.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -236,7 +236,6 @@
vsComboBoxModel = new DefaultComboBoxModel();
final VisualStyle defaultVS = manager.getDefaultStyle();
vsComboBoxModel.addElement(defaultVS);
- vmm.addVisualStyle(defaultVS);
visualStyleComboBox = new JComboBox(vsComboBoxModel);
optionButton = new DropDownMenuButton(new AbstractAction() {
Modified:
core3/vizmap-impl/trunk/src/main/java/org/cytoscape/view/vizmap/internal/VisualMappingManagerImpl.java
===================================================================
---
core3/vizmap-impl/trunk/src/main/java/org/cytoscape/view/vizmap/internal/VisualMappingManagerImpl.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
core3/vizmap-impl/trunk/src/main/java/org/cytoscape/view/vizmap/internal/VisualMappingManagerImpl.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -43,20 +43,21 @@
import org.cytoscape.view.model.CyNetworkView;
import org.cytoscape.view.vizmap.VisualMappingManager;
import org.cytoscape.view.vizmap.VisualStyle;
+import org.cytoscape.view.vizmap.events.VisualStyleCreatedEvent;
+import org.cytoscape.view.vizmap.events.VisualStyleCreatedListener;
import org.cytoscape.view.vizmap.events.VisualStyleDestroyedEvent;
+import org.cytoscape.view.vizmap.events.VisualStyleDestroyedListener;
-
/**
*
*/
-public class VisualMappingManagerImpl implements VisualMappingManager {
-
+public class VisualMappingManagerImpl implements VisualMappingManager,
VisualStyleCreatedListener, VisualStyleDestroyedListener {
+
private final Map<CyNetworkView, VisualStyle> network2VisualStyleMap;
private final Set<VisualStyle> visualStyles;
-
+
private final CyEventHelper cyEventHelper;
-
-
+
public VisualMappingManagerImpl(final CyEventHelper eventHelper) {
if (eventHelper == null)
throw new IllegalArgumentException("CyEventHelper
cannot be null");
@@ -69,52 +70,72 @@
/**
* DOCUMENT ME!
- *
+ *
* @param nv
* DOCUMENT ME!
- *
+ *
* @return DOCUMENT ME!
*/
- @Override public VisualStyle getVisualStyle(CyNetworkView nv) {
+ @Override
+ public VisualStyle getVisualStyle(CyNetworkView nv) {
return network2VisualStyleMap.get(nv);
}
/**
* DOCUMENT ME!
- *
+ *
* @param vs
* DOCUMENT ME!
* @param nv
* DOCUMENT ME!
*/
- @Override public void setVisualStyle(VisualStyle vs, CyNetworkView nv) {
+ @Override
+ public void setVisualStyle(VisualStyle vs, CyNetworkView nv) {
network2VisualStyleMap.put(nv, vs);
}
-
/**
- * Remove the style from this manager and delete it.
- *
+ * Remove a {...@linkplain VisualStyle} from this manager. This will be
called
+ * through OSGi service mechanism.
+ *
* @param vs
* DOCUMENT ME!
*/
- @Override public void removeVisualStyle(VisualStyle vs) {
+ private void removeVisualStyle(VisualStyle vs) {
visualStyles.remove(vs);
- cyEventHelper.fireSynchronousEvent(new
VisualStyleDestroyedEvent(this,vs));
+ cyEventHelper.fireSynchronousEvent(new
VisualStyleDestroyedEvent(this,
+ vs));
vs = null;
}
-
/**
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
+ * Add a new VisualStyle ot this manager. This will be called through
OSGi
+ * service mechanism.
+ *
+ * @param vs
*/
- @Override public Set<VisualStyle> getAllVisualStyles() {
+ private void addVisualStyle(final VisualStyle vs) {
+ this.visualStyles.add(vs);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ @Override
+ public Set<VisualStyle> getAllVisualStyles() {
return visualStyles;
}
- @Override public void addVisualStyle(VisualStyle vs) {
- this.visualStyles.add(vs);
+ @Override
+ public void handleEvent(VisualStyleDestroyedEvent e) {
+ removeVisualStyle(e.getDestroyedVisualStyle());
}
+
+ @Override
+ public void handleEvent(VisualStyleCreatedEvent e) {
+ addVisualStyle(e.getCreatedVisualStyle());
+ }
+
}
Modified:
cytoscape3/trunk/application/src/main/java/cytoscape/internal/dialogs/PreferencesDialogImpl.java
===================================================================
---
cytoscape3/trunk/application/src/main/java/cytoscape/internal/dialogs/PreferencesDialogImpl.java
2010-10-26 20:21:37 UTC (rev 22471)
+++
cytoscape3/trunk/application/src/main/java/cytoscape/internal/dialogs/PreferencesDialogImpl.java
2010-10-26 20:24:47 UTC (rev 22472)
@@ -36,35 +36,41 @@
*/
package cytoscape.internal.dialogs;
-import org.cytoscape.event.CyEventHelper;
-
-import org.cytoscape.view.vizmap.events.SaveVizmapPropsEvent;
-import org.cytoscape.view.vizmap.events.SaveVizmapPropsListener;
-
-import cytoscape.events.PreferencesUpdatedEvent;
-import cytoscape.events.PreferencesUpdatedListener;
-
-import cytoscape.Cytoscape;
-import cytoscape.CyOperatingContext;
-
-import javax.swing.*;
-import javax.swing.event.ListSelectionEvent;
-import javax.swing.event.ListSelectionListener;
-import javax.swing.table.DefaultTableCellRenderer;
-import javax.swing.table.TableColumn;
-import javax.swing.table.TableModel;
-import java.awt.*;
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.FlowLayout;
+import java.awt.Frame;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyChangeListener;
import java.io.File;
import java.io.FileOutputStream;
import java.util.Properties;
+import javax.swing.BorderFactory;
+import javax.swing.Box;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JDialog;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTable;
+import javax.swing.JTextArea;
+import javax.swing.ListSelectionModel;
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+import javax.swing.table.DefaultTableCellRenderer;
+import javax.swing.table.TableColumn;
+import javax.swing.table.TableModel;
+import org.cytoscape.event.CyEventHelper;
+
+import cytoscape.CyOperatingContext;
+import cytoscape.events.PreferencesUpdatedEvent;
+
+
/**
*
*/
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