Author: scooter
Date: 2010-10-28 16:08:51 -0700 (Thu, 28 Oct 2010)
New Revision: 22610
Modified:
csplugins/trunk/ucsf/scooter/structureViz/samples/test.cmd
csplugins/trunk/ucsf/scooter/structureViz/src/structureViz/actions/CyChimera.java
Log:
Add biopax PDB attribute to the default list
Modified: csplugins/trunk/ucsf/scooter/structureViz/samples/test.cmd
===================================================================
--- csplugins/trunk/ucsf/scooter/structureViz/samples/test.cmd 2010-10-28
23:08:13 UTC (rev 22609)
+++ csplugins/trunk/ucsf/scooter/structureViz/samples/test.cmd 2010-10-28
23:08:51 UTC (rev 22610)
@@ -1,6 +1,8 @@
network create createview=true name="Test" sourcelist="node0"
node set attribute node="node0" name="pdbFileName" value="1bna"
structureviz open structure pdbid="1yti"
-structureviz open structure pdbid="1bna"
+# structureviz open structure nodeList="node0"
structureviz color atomspec="1yti.I" residues="red"
structureviz rainbow atomspec="1yti.A"
+structureviz depict atomspec="#0" style="bs"
+structureviz rotate structurelist="1yti" x="90"
Modified:
csplugins/trunk/ucsf/scooter/structureViz/src/structureViz/actions/CyChimera.java
===================================================================
---
csplugins/trunk/ucsf/scooter/structureViz/src/structureViz/actions/CyChimera.java
2010-10-28 23:08:13 UTC (rev 22609)
+++
csplugins/trunk/ucsf/scooter/structureViz/src/structureViz/actions/CyChimera.java
2010-10-28 23:08:51 UTC (rev 22610)
@@ -65,7 +65,7 @@
* @author scooter
*/
public class CyChimera {
- public static final String[] structureKeys =
{"Structure","pdb","pdbFileName","PDB ID","structure",null};
+ public static final String[] structureKeys =
{"Structure","pdb","pdbFileName","PDB ID","structure","biopax.xref.PDB",null};
public static final String[] chemStructKeys =
{"Smiles","smiles","SMILES",null};
public static final String[] residueKeys =
{"FunctionalResidues","ResidueList",null};
public static final String[] sequenceKeys = {"sequence",null};
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