See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1688/>
------------------------------------------
[...truncated 1119 lines...]
at net.sourceforge.pmd.RuleSets.apply(RuleSets.java:138)
[pmd-4.2.5.jar:na]
at net.sourceforge.pmd.PMD.processFile(PMD.java:126) [pmd-4.2.5.jar:na]
at net.sourceforge.pmd.PMD.processFile(PMD.java:75) [pmd-4.2.5.jar:na]
at org.sonar.plugins.pmd.PmdExecutor.execute(PmdExecutor.java:68)
[sonar-pmd-plugin-2.2.jar:na]
at org.sonar.plugins.pmd.PmdSensor.analyse(PmdSensor.java:48)
[sonar-pmd-plugin-2.2.jar:na]
at org.sonar.batch.SensorsExecutor.execute(SensorsExecutor.java:58)
[sonar-batch-2.2.jar:na]
at org.sonar.batch.ProjectBatch.execute(ProjectBatch.java:53)
[sonar-batch-2.2.jar:na]
at org.sonar.batch.Batch.analyzeProject(Batch.java:112)
[sonar-batch-2.2.jar:na]
at org.sonar.batch.Batch.analyzeProjects(Batch.java:81)
[sonar-batch-2.2.jar:na]
at org.sonar.batch.Batch.execute(Batch.java:57) [sonar-batch-2.2.jar:na]
at org.sonar.maven2.BatchMojo.executeBatch(BatchMojo.java:142)
[sonar-core-maven-plugin-20101031010106.jar:na]
at org.sonar.maven2.BatchMojo.execute(BatchMojo.java:133)
[sonar-core-maven-plugin-20101031010106.jar:na]
at
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
[maven-2.1.0-uber.jar:2.1.0]
at
org.sonar.mojo.bootstrap.Bootstraper.executeMojo(Bootstraper.java:76)
[sonar-maven-plugin-1.8.jar:na]
at org.sonar.mojo.bootstrap.Bootstraper.start(Bootstraper.java:62)
[sonar-maven-plugin-1.8.jar:na]
at org.sonar.mojo.bootstrap.SonarMojo.execute(SonarMojo.java:112)
[sonar-maven-plugin-1.8.jar:na]
at
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:553)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:523)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:268)
[maven-2.1.0-uber.jar:2.1.0]
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
[maven-2.1.0-uber.jar:2.1.0]
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
[maven-2.1.0-uber.jar:2.1.0]
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
[maven-2.1.0-uber.jar:2.1.0]
at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
[maven-2.1.0-uber.jar:2.1.0]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[na:1.6.0_20]
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
[na:1.6.0_20]
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
[na:1.6.0_20]
at java.lang.reflect.Method.invoke(Method.java:597) [na:1.6.0_20]
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
[classworlds-1.1.jar:1.1]
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
[classworlds-1.1.jar:1.1]
at
org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
[classworlds-1.1.jar:1.1]
at org.codehaus.classworlds.Launcher.main(Launcher.java:375)
[classworlds-1.1.jar:1.1]
[INFO] PMD output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/pmd-result.xml>
[INFO] Execute PMD 4.2.5 done: 6189 ms
[INFO] Sensor PmdSensor done: 6600 ms
[INFO] Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.io-impl [org.cytoscape.io]
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 0 resource
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 119 files to
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 119 classes.
Instrument time: 4477ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/presentation-api/1.0-SNAPSHOT/presentation-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource
'org.cytoscape:presentation-api:jar:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/session-api/1.0-SNAPSHOT/session-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:session-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/property-api/1.0-SNAPSHOT/property-api-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:property-api:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar
[INFO] Unable to find resource
'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository
cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar
[INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in
repository cytoscape_biopax_snapshot
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
[INFO] [surefire:test]
[INFO] Surefire report directory:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.cytoscape.io.internal.read.gml.GMLNetworkViewReaderTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.448 sec
Running org.cytoscape.io.internal.read.sif.SIFNetworkViewReaderTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec
Running org.cytoscape.io.internal.read.gml.GMLFileFilterTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
Running org.cytoscape.io.internal.read.xgmml.XGMMLNetworkViewReaderTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.931 sec
Running org.cytoscape.io.internal.read.sif.InteractionTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec
Running org.cytoscape.io.internal.read.datatable.TextDataTableReaderTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 sec
Results :
Tests run: 18, Failures: 0, Errors: 0, Skipped: 0
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 119 classes.
Report time: 1498ms
[INFO] Cobertura Report generation was successful.
[INFO] Execute maven plugin cobertura-maven-plugin done: 17011 ms
[INFO] Sensor CoberturaSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] Sensor CoberturaSensor done: 953 ms
[INFO] Sensor CpdSensor...
[INFO] Sensor CpdSensor done: 270 ms
[INFO] Execute maven plugin taglist-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.io-impl [org.cytoscape.io]
[INFO] task-segment: [org.codehaus.mojo:taglist-maven-plugin:2.4:taglist]
[INFO] ------------------------------------------------------------------------
[WARNING] DEPRECATED [tags]: No reason given
[INFO] [taglist:taglist]
[WARNING] Using legacy tag format. This is not recommended.
[INFO] Execute maven plugin taglist-maven-plugin done: 1788 ms
[INFO] Sensor org.sonar.plugins.taglist.taglistsen...@34e6529c...
[INFO] Sensor org.sonar.plugins.taglist.taglistsen...@34e6529c done: 407 ms
[INFO] Sensor SurefireSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/surefire-reports>
[INFO] Sensor SurefireSensor done: 42 ms
[INFO] Execute decorators...
[INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar/
[INFO] Database optimization...
[INFO] Database optimization done: 4160 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1 minute 22 seconds
[INFO] Finished at: Sun Oct 31 20:11:08 EDT 2010
[INFO] Final Memory: 91M/783M
[INFO] ------------------------------------------------------------------------
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