Author: ruschein
Date: 2010-11-10 14:28:30 -0800 (Wed, 10 Nov 2010)
New Revision: 22806
Added:
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java
Log:
Added 2 more tests.
Copied:
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java
(from rev 22803,
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java)
===================================================================
---
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java
(rev 0)
+++
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java
2010-11-10 22:28:30 UTC (rev 22806)
@@ -0,0 +1,91 @@
+/*
+ File: SourceIDTest.java
+
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+package org.cytoscape.equations.internal.functions;
+
+
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import static org.mockito.Mockito.*;
+
+import org.cytoscape.equations.EqnCompiler;
+import org.cytoscape.equations.Equation;
+import org.cytoscape.equations.IdentDescriptor;
+import org.cytoscape.equations.Interpreter;
+import org.cytoscape.equations.internal.EqnCompilerImpl;
+import org.cytoscape.equations.internal.EqnParserImpl;
+import org.cytoscape.equations.internal.SUIDToEdgeMapper;
+import org.cytoscape.equations.internal.interpreter.InterpreterImpl;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.events.AddedEdgeEvent;
+
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+
+public class SourceIDTest {
+ private SUIDToEdgeMapper suidToEdgeMapper;
+
+ @Before
+ public void init() {
+ final CyNode node = mock(CyNode.class);
+ when(node.getSUID()).thenReturn(101L);
+
+ final List<CyEdge> edgeList = mock(List.class);
+ when(edgeList.size()).thenReturn(3);
+
+ final CyNetwork network = mock(CyNetwork.class);
+
+ final CyEdge edge = mock(CyEdge.class);
+ when(edge.getSUID()).thenReturn(11L);
+ when(edge.getSource()).thenReturn(node);
+
+ suidToEdgeMapper = new SUIDToEdgeMapper();
+ suidToEdgeMapper.handleEvent(new AddedEdgeEvent(network, edge));
+ }
+
+ @Test
+ public void test() {
+ final EqnCompiler compiler = new EqnCompilerImpl(new
EqnParserImpl());
+ compiler.getParser().registerFunction(new
SourceID(suidToEdgeMapper));
+ final Map<String, Class> variableNameToTypeMap = new
HashMap<String, Class>();
+ if (!compiler.compile("=SOURCEID(11)", variableNameToTypeMap))
+ fail(compiler.getLastErrorMsg());
+ final Equation equation = compiler.getEquation();
+ final Interpreter interpreter = new InterpreterImpl();
+ final Map<String, IdentDescriptor> variableNameToDescriptorMap
= new HashMap<String, IdentDescriptor>();
+ assertEquals("Equation evaluation returned an unexpected
result!", 101L,
+ interpreter.execute(equation,
variableNameToDescriptorMap));
+ }
+}
Copied:
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java
(from rev 22803,
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java)
===================================================================
---
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java
(rev 0)
+++
core3/equations-functions-impl/trunk/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java
2010-11-10 22:28:30 UTC (rev 22806)
@@ -0,0 +1,91 @@
+/*
+ File: TargetIDTest.java
+
+ Copyright (c) 2010, The Cytoscape Consortium (www.cytoscape.org)
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+package org.cytoscape.equations.internal.functions;
+
+
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import static org.mockito.Mockito.*;
+
+import org.cytoscape.equations.EqnCompiler;
+import org.cytoscape.equations.Equation;
+import org.cytoscape.equations.IdentDescriptor;
+import org.cytoscape.equations.Interpreter;
+import org.cytoscape.equations.internal.EqnCompilerImpl;
+import org.cytoscape.equations.internal.EqnParserImpl;
+import org.cytoscape.equations.internal.SUIDToEdgeMapper;
+import org.cytoscape.equations.internal.interpreter.InterpreterImpl;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.events.AddedEdgeEvent;
+
+import static org.junit.Assert.*;
+import org.junit.Test;
+import org.junit.Before;
+
+
+public class TargetIDTest {
+ private SUIDToEdgeMapper suidToEdgeMapper;
+
+ @Before
+ public void init() {
+ final CyNode node = mock(CyNode.class);
+ when(node.getSUID()).thenReturn(101L);
+
+ final List<CyEdge> edgeList = mock(List.class);
+ when(edgeList.size()).thenReturn(3);
+
+ final CyNetwork network = mock(CyNetwork.class);
+
+ final CyEdge edge = mock(CyEdge.class);
+ when(edge.getSUID()).thenReturn(11L);
+ when(edge.getTarget()).thenReturn(node);
+
+ suidToEdgeMapper = new SUIDToEdgeMapper();
+ suidToEdgeMapper.handleEvent(new AddedEdgeEvent(network, edge));
+ }
+
+ @Test
+ public void test() {
+ final EqnCompiler compiler = new EqnCompilerImpl(new
EqnParserImpl());
+ compiler.getParser().registerFunction(new
TargetID(suidToEdgeMapper));
+ final Map<String, Class> variableNameToTypeMap = new
HashMap<String, Class>();
+ if (!compiler.compile("=TARGETID(11)", variableNameToTypeMap))
+ fail(compiler.getLastErrorMsg());
+ final Equation equation = compiler.getEquation();
+ final Interpreter interpreter = new InterpreterImpl();
+ final Map<String, IdentDescriptor> variableNameToDescriptorMap
= new HashMap<String, IdentDescriptor>();
+ assertEquals("Equation evaluation returned an unexpected
result!", 101L,
+ interpreter.execute(equation,
variableNameToDescriptorMap));
+ }
+}
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