See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/1/>
------------------------------------------ [...truncated 72 lines...] A src/test/java/org/cytoscape/equations/internal/builtins/CoshTest.java A src/test/java/org/cytoscape/equations/internal/builtins/Framework.java A src/test/java/org/cytoscape/equations/internal/builtins/IfTest.java A src/test/java/org/cytoscape/equations/internal/builtins/SListTest.java A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/equations A src/main/java/org/cytoscape/equations/internal A src/main/java/org/cytoscape/equations/internal/EqnCompilerImpl.java A src/main/java/org/cytoscape/equations/internal/Token.java A src/main/java/org/cytoscape/equations/internal/EqnParserImpl.java A src/main/java/org/cytoscape/equations/internal/Tokeniser.java A src/main/java/org/cytoscape/equations/internal/interpreter A src/main/java/org/cytoscape/equations/internal/interpreter/Instruction.java A src/main/java/org/cytoscape/equations/internal/interpreter/InterpreterImpl.java A src/main/java/org/cytoscape/equations/internal/builtins A src/main/java/org/cytoscape/equations/internal/builtins/Not.java A src/main/java/org/cytoscape/equations/internal/builtins/Sign.java A src/main/java/org/cytoscape/equations/internal/builtins/Largest.java A src/main/java/org/cytoscape/equations/internal/builtins/Sinh.java A src/main/java/org/cytoscape/equations/internal/builtins/And.java A src/main/java/org/cytoscape/equations/internal/builtins/Last.java A src/main/java/org/cytoscape/equations/internal/builtins/Sum.java A src/main/java/org/cytoscape/equations/internal/builtins/Combin.java A src/main/java/org/cytoscape/equations/internal/builtins/Mid.java A src/main/java/org/cytoscape/equations/internal/builtins/Ln.java A src/main/java/org/cytoscape/equations/internal/builtins/Average.java A src/main/java/org/cytoscape/equations/internal/builtins/HarMean.java A src/main/java/org/cytoscape/equations/internal/builtins/GeoMean.java A src/main/java/org/cytoscape/equations/internal/builtins/Permut.java A src/main/java/org/cytoscape/equations/internal/builtins/BList.java A src/main/java/org/cytoscape/equations/internal/builtins/Mod.java A src/main/java/org/cytoscape/equations/internal/builtins/Or.java A src/main/java/org/cytoscape/equations/internal/builtins/Log.java A src/main/java/org/cytoscape/equations/internal/builtins/FList.java A src/main/java/org/cytoscape/equations/internal/builtins/Radians.java A src/main/java/org/cytoscape/equations/internal/builtins/Min.java A src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java A src/main/java/org/cytoscape/equations/internal/builtins/Mode.java A src/main/java/org/cytoscape/equations/internal/builtins/Text.java A src/main/java/org/cytoscape/equations/internal/builtins/Max.java A src/main/java/org/cytoscape/equations/internal/builtins/StDev.java A src/main/java/org/cytoscape/equations/internal/builtins/First.java A src/main/java/org/cytoscape/equations/internal/builtins/Count.java A src/main/java/org/cytoscape/equations/internal/builtins/Sin.java A src/main/java/org/cytoscape/equations/internal/builtins/Sqrt.java A src/main/java/org/cytoscape/equations/internal/builtins/ASin.java A src/main/java/org/cytoscape/equations/internal/builtins/Trunc.java A src/main/java/org/cytoscape/equations/internal/builtins/Exp.java A src/main/java/org/cytoscape/equations/internal/builtins/Median.java A src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java A src/main/java/org/cytoscape/equations/internal/builtins/Now.java A src/main/java/org/cytoscape/equations/internal/builtins/ListToString.java A src/main/java/org/cytoscape/equations/internal/builtins/ATan2.java A src/main/java/org/cytoscape/equations/internal/builtins/Abs.java A src/main/java/org/cytoscape/equations/internal/builtins/Pi.java A src/main/java/org/cytoscape/equations/internal/builtins/Substitute.java A src/main/java/org/cytoscape/equations/internal/builtins/Value.java A src/main/java/org/cytoscape/equations/internal/builtins/Right.java A src/main/java/org/cytoscape/equations/internal/builtins/Len.java A src/main/java/org/cytoscape/equations/internal/builtins/Degrees.java A src/main/java/org/cytoscape/equations/internal/builtins/Product.java A src/main/java/org/cytoscape/equations/internal/builtins/Today.java A src/main/java/org/cytoscape/equations/internal/builtins/Tan.java A src/main/java/org/cytoscape/equations/internal/builtins/IList.java A src/main/java/org/cytoscape/equations/internal/builtins/Cos.java A src/main/java/org/cytoscape/equations/internal/builtins/ACos.java A src/main/java/org/cytoscape/equations/internal/builtins/Round.java A src/main/java/org/cytoscape/equations/internal/builtins/Lower.java A src/main/java/org/cytoscape/equations/internal/builtins/Var.java A src/main/java/org/cytoscape/equations/internal/builtins/Error.java A src/main/java/org/cytoscape/equations/internal/builtins/Nth.java A src/main/java/org/cytoscape/equations/internal/builtins/Left.java A src/main/java/org/cytoscape/equations/internal/builtins/Tanh.java A src/main/java/org/cytoscape/equations/internal/builtins/Upper.java A src/main/java/org/cytoscape/equations/internal/builtins/Cosh.java A src/main/java/org/cytoscape/equations/internal/builtins/If.java A src/main/java/org/cytoscape/equations/internal/builtins/SList.java A src/main/java/org/cytoscape/equations/internal/parse_tree A src/main/java/org/cytoscape/equations/internal/parse_tree/BooleanConstantNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/FConvNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/UnaryOpNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/FloatConstantNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/StringConstantNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/IdentNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/BinOpNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/FuncCallNode.java A src/main/java/org/cytoscape/equations/internal/parse_tree/SConvNode.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 22811 No emails were triggered. Parsing POMs Discovered a new module org.cytoscape:equations-impl org.cytoscape.equations-impl [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 52303 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/src/integration/resources> [INFO] Copying 0 resource [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from spring-osgi-snapshots Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Impl/modules/org.cytoscape$equations-impl/builds/2010-11-10_17-56-09/archive/org.cytoscape/equations-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Failed to resolve artifact. Missing: ---------- 1) org.cytoscape:equations-api:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=equations-api -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=equations-api -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:equations-impl:bundle:1.0-SNAPSHOT 2) org.cytoscape:equations-api:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:equations-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 14 seconds [INFO] Finished at: Wed Nov 10 17:56:26 EST 2010 [INFO] Final Memory: 28M/219M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-api:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-api/1.0-SNAPSHOT/equations-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-api:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Missing: ---------- 1) org.cytoscape:equations-api:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=equations-api -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=equations-api -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:equations-impl:bundle:1.0-SNAPSHOT 2) org.cytoscape:equations-api:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:equations-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), sonar (http://localhost:8021/sonar/deploy/maven), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 second [INFO] Finished at: Wed Nov 10 17:56:28 EST 2010 [INFO] Final Memory: 12M/213M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
