See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/1/>
------------------------------------------ Started by user hudson-admin Checking out http://chianti.ucsd.edu/svn/core3/equations-functions-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/equations A src/test/java/org/cytoscape/equations/internal A src/test/java/org/cytoscape/equations/internal/functions A src/test/java/org/cytoscape/equations/internal/functions/InDegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/OutDegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java A src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/equations A src/main/java/org/cytoscape/equations/internal A src/main/java/org/cytoscape/equations/internal/SUIDToEdgeMapper.java A src/main/java/org/cytoscape/equations/internal/SUIDToNodeMapper.java A src/main/java/org/cytoscape/equations/internal/FunctionRegistrar.java A src/main/java/org/cytoscape/equations/internal/functions A src/main/java/org/cytoscape/equations/internal/functions/InDegree.java A src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java A src/main/java/org/cytoscape/equations/internal/functions/TargetID.java A src/main/java/org/cytoscape/equations/internal/functions/Degree.java A src/main/java/org/cytoscape/equations/internal/functions/SourceID.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 22811 No emails were triggered. Parsing POMs Discovered a new module org.cytoscape:equations-functions-impl org.cytoscape.equations-functions-impl [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 57951 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-functions-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/resources> [INFO] Copying 0 resource [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from spring-osgi-snapshots Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [pax:compile] [INFO] Compiling 8 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/classes> [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/resources> Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Functions Impl/modules/org.cytoscape$equations-functions-impl/builds/2010-11-10_17-56-56/archive/org.cytoscape/equations-functions-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Failed to resolve artifact. Missing: ---------- 1) org.cytoscape:equations-impl:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=equations-impl -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=equations-impl -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:equations-functions-impl:bundle:1.0-SNAPSHOT 2) org.cytoscape:equations-impl:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:equations-functions-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 18 seconds [INFO] Finished at: Wed Nov 10 17:57:17 EST 2010 [INFO] Final Memory: 50M/493M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-functions-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:equations-impl:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:equations-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Missing: ---------- 1) org.cytoscape:equations-impl:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=equations-impl -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=equations-impl -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:equations-functions-impl:bundle:1.0-SNAPSHOT 2) org.cytoscape:equations-impl:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:equations-functions-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), sonar (http://localhost:8021/sonar/deploy/maven), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2 seconds [INFO] Finished at: Wed Nov 10 17:57:21 EST 2010 [INFO] Final Memory: 13M/213M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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